Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 187521015 . G A CCDS2292.1:NM_002210.4:c.1606Gga>Aga_NP_002201.1:p.536G>R Homo sapiens integrin subunit alpha V (ITGAV), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6uja 1 P06756 99.9 0.0 EM
 2020-02-05 GLY A:506 A:506 87.0 1.0 T 105.6 -16.9 87.0 1.0 0.0
6ujb 1 P06756 99.9 0.0 EM
 2020-02-05 GLY A:506 A:506 91.0 1.0 T 102.8 -14.2 91.0 1.0 0.0
6ujc 1 P06756 99.9 0.0 EM
 2020-02-05 GLY A:506 A:506 87.0 1.0 T 106.7 -15.4 87.0 1.0 0.0
3ije 1 P06756 99.9 0.0 X-RAY
 2009-09-29 GLY A:506 A:506 87.0 1.0 T 82.1 -39.9 52.0 0.693 0.307 B:P05106:0.467
6msl 1 P06756 99.9 0.0 X-RAY
 2019-10-23 GLY A:506 A:506 64.0 0.853 S 113.9 -21.5 15.0 0.2 0.653 B:P05106:0.653
6msu 1 P06756 99.9 0.0 X-RAY
 2019-10-23 GLY A:506 A:506 73.0 0.973 S 120.4 -22.1 37.0 0.493 0.48 B:P05106:0.48
6djp 1 P06756 99.9 0.0 EM
 2018-07-25 GLY A:506 A:506 84.0 1.0 T 82.8 2.3 84.0 1.0 0.0
4o02 1 P06756 99.9 0.0 X-RAY
 2014-04-02 GLY A:506 A:506 44.0 0.587 S 154.1 -153.7 44.0 0.587 0.0
4g1e 1 P06756 99.9 0.0 X-RAY
 2012-12-12 GLY A:506 A:506 96.0 1.0 T 100.4 -24.8 67.0 0.893 0.107 B:P05106:0.387
 HOH
 6.112
 N
 O
4g1m 1 P06756 99.9 0.0 X-RAY
 2012-12-12 GLY A:506 A:506 87.0 1.0 S 108.1 -8.8 27.0 0.36 0.64 B:P05106:0.8
4mmx 1 P06756 99.9 0.0 X-RAY
 2014-03-26 GLY A:506 A:506 93.0 1.0 S 46.3 36.5 29.0 0.387 0.613 B:P05106:0.853
4mmy 1 P06756 99.9 0.0 X-RAY
 2014-03-26 GLY A:506 A:506 95.0 1.0 S 59.7 24.4 42.0 0.56 0.44 B:P05106:0.707
4mmz 1 P06756 99.9 0.0 X-RAY
 2014-03-26 GLY A:506 A:506 76.0 1.0 S -68.1 118.4 26.0 0.347 0.653 B:P05106:0.667
6avq 1 P06756 100.0 0.0 EM
 2017-11-01 GLY A:506 A:506 84.0 1.0 T 86.6 -2.0 35.0 0.467 0.533 B:P05106:0.653
6avr 1 P06756 100.0 0.0 EM
 2017-11-01 GLY A:506 A:506 84.0 1.0 T 89.5 -7.2 45.0 0.6 0.4 B:P05106:0.52
6avu 1 P06756 100.0 0.0 EM
 2017-11-01 GLY A:506 A:506 82.0 1.0 T 92.2 -8.6 82.0 1.0 0.0
1jv2 1 14743192 99.9 0.0 X-RAY
 2001-10-17 GLY A:506 A:506 54.0 0.72 T -65.8 -36.1 54.0 0.72 0.0
1l5g 1 14743192 99.9 0.0 X-RAY
 2002-04-17 GLY A:506 A:506 58.0 0.773 T -59.3 -11.0 58.0 0.773 0.0
1m1x 1 14743192 99.9 0.0 X-RAY
 2002-08-14 GLY A:506 A:506 70.0 0.933 T -65.7 -25.3 70.0 0.933 0.0
1u8c 1 P06756 99.9 0.0 X-RAY
 2004-12-28 GLY A:506 A:506 53.0 0.707 S 110.7 25.6 53.0 0.707 0.0
6mk0 1 P06756 99.9 0.0 X-RAY
 2019-09-25 GLY A:506 A:506 64.0 0.853 S -164.5 116.0 30.0 0.4 0.453 B:P05106:0.453
6naj 1 P06756 99.9 0.0 X-RAY
 2019-12-11 GLY A:506 A:506 69.0 0.92 S -101.1 95.8 12.0 0.16 0.76 B:P05106:0.76
4um8 1 P06756 99.66 0.0 X-RAY
 2014-11-12 GLY A:506 NA:NA DO NA DO DO DO NA NA NA
GLY C:506 C:506 121.0 1.0 360.0 -30.0 NA NA NA
4um9 1 P06756 99.66 0.0 X-RAY
 2014-11-12 GLY A:506 A:506 82.0 1.0 T 145.7 -54.6 NA NA NA
GLY C:506 C:506 118.0 1.0 360.0 -51.1 118.0 1.0 0.0 HOH
 8.819
 O
 O
5ner 5 P06756 99.83 0.0 EM
 2017-06-21 GLY E:506 A:506 117.0 1.0 360.0 -34.6 117.0 1.0 0.0
5net 5 P06756 99.83 0.0 EM
 2017-06-21 GLY E:506 A:506 117.0 1.0 360.0 -34.6 117.0 1.0 0.0
5ffg 1 P06756 99.5 0.0 X-RAY
 2017-01-25 GLY A:507 A:507 76.0 1.0 T 84.5 2.2 76.0 1.0 0.0 SO4
MES
HOH
 8.183
3.202
3.416
 O
O
N
 O4
C6
O
5ffo 1 P06756 99.5 0.0 X-RAY
 2017-01-25 GLY A:507 A:507 74.0 0.987 T 136.5 -17.7 74.0 0.987 0.0
GLY E:507 E:507 76.0 1.0 T 136.5 -17.6 76.0 1.0 0.0
6om1 1 P06756 99.33 0.0 X-RAY
 2019-12-11 GLY A:507 A:507 87.0 1.0 T -55.7 -27.4 87.0 1.0 0.0
GLY C:507 NA:NA DO NA DO DO DO NA NA NA
GLY E:507 NA:NA DO NA DO DO DO NA NA NA
GLY G:507 NA:NA DO NA DO DO DO NA NA NA
6om2 1 P06756 99.33 0.0 X-RAY
 2019-12-11 GLY A:507 A:507 82.0 1.0 S -68.1 -34.8 82.0 1.0 0.0 HOH
 7.982
 O
 O
GLY C:507 C:507 78.0 1.0 T 106.8 -57.6 78.0 1.0 0.0 HOH
 8.143
 O
 O
5nem 5 P06756 99.16 0.0 EM
 2017-06-21 GLY E:502 A:506 116.0 1.0 360.0 -34.5 116.0 1.0 0.0
5neu 5 P06756 99.16 0.0 EM
 2017-06-21 GLY E:502 A:506 107.0 1.0 360.0 -81.6 107.0 1.0 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p06756-f1 1 P06756 99.9 0.0 GLY A:536 A:536 90.0 1.0 T 77.4 -6.9