Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 187521051 . T A CCDS2292.1:NM_002210.4:c.1642Tcc>Acc_NP_002201.1:p.548S>T Homo sapiens integrin subunit alpha V (ITGAV), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6uja 1 P06756 99.9 0.0 EM
 2020-02-05 SER A:518 A:518 26.0 NA S -141.7 145.5 26.0 NA NA
6ujb 1 P06756 99.9 0.0 EM
 2020-02-05 SER A:518 A:518 24.0 NA B -142.6 145.5 24.0 NA NA
6ujc 1 P06756 99.9 0.0 EM
 2020-02-05 SER A:518 A:518 28.0 NA B -136.4 141.7 28.0 NA NA
3ije 1 P06756 99.9 0.0 X-RAY
 2009-09-29 SER A:518 A:518 34.0 0.296 S -136.0 149.3 34.0 0.296 0.0
6msl 1 P06756 99.9 0.0 X-RAY
 2019-10-23 SER A:518 A:518 44.0 0.383 S -111.9 159.3 44.0 0.383 0.0
6msu 1 P06756 99.9 0.0 X-RAY
 2019-10-23 SER A:518 A:518 30.0 0.261 S -156.2 161.8 30.0 0.261 0.0
6djp 1 P06756 99.9 0.0 EM
 2018-07-25 SER A:518 A:518 27.0 NA B -147.8 145.8 27.0 NA NA
4o02 1 P06756 99.9 0.0 X-RAY
 2014-04-02 SER A:518 A:518 31.0 NA -135.8 147.5 31.0 NA NA
4g1e 1 P06756 99.9 0.0 X-RAY
 2012-12-12 SER A:518 A:518 43.0 0.374 S -143.8 152.5 43.0 0.374 0.0 SO4
HOH
 6.184
3.175
 O
OG
 O2
O
4g1m 1 P06756 99.9 0.0 X-RAY
 2012-12-12 SER A:518 A:518 24.0 0.209 S -132.3 159.8 24.0 0.209 0.0
4mmx 1 P06756 99.9 0.0 X-RAY
 2014-03-26 SER A:518 A:518 37.0 0.322 S -131.1 150.3 37.0 0.322 0.0
4mmy 1 P06756 99.9 0.0 X-RAY
 2014-03-26 SER A:518 A:518 34.0 0.296 S -141.1 149.5 34.0 0.296 0.0
4mmz 1 P06756 99.9 0.0 X-RAY
 2014-03-26 SER A:518 A:518 29.0 0.252 S -128.7 150.5 29.0 0.252 0.0
6avq 1 P06756 100.0 0.0 EM
 2017-11-01 SER A:518 A:518 44.0 NA S -152.9 163.1 44.0 NA NA
6avr 1 P06756 100.0 0.0 EM
 2017-11-01 SER A:518 A:518 44.0 NA S -152.8 163.5 44.0 NA NA
6avu 1 P06756 100.0 0.0 EM
 2017-11-01 SER A:518 A:518 45.0 NA S -151.6 163.7 45.0 NA NA
1jv2 1 14743192 99.9 0.0 X-RAY
 2001-10-17 SER A:518 A:518 48.0 0.417 S 169.9 151.5 48.0 0.417 0.0
1l5g 1 14743192 99.9 0.0 X-RAY
 2002-04-17 SER A:518 A:518 36.0 0.313 -163.0 148.0 36.0 0.313 0.0
1m1x 1 14743192 99.9 0.0 X-RAY
 2002-08-14 SER A:518 A:518 44.0 0.383 S -171.6 153.0 44.0 0.383 0.0
1u8c 1 P06756 99.9 0.0 X-RAY
 2004-12-28 SER A:518 A:518 28.0 0.243 S -110.7 153.2 28.0 0.243 0.0
6mk0 1 P06756 99.9 0.0 X-RAY
 2019-09-25 SER A:518 A:518 33.0 0.287 S -134.7 155.8 33.0 0.287 0.0
6naj 1 P06756 99.9 0.0 X-RAY
 2019-12-11 SER A:518 A:518 32.0 0.278 S -130.8 148.6 32.0 0.278 0.0
4um8 1 P06756 99.66 0.0 X-RAY
 2014-11-12 SER A:518 A:518 38.0 0.33 -129.7 139.8 38.0 0.33 0.0 HOH
 8.800
 OG
 O
SER C:518 C:518 41.0 0.357 S -131.6 140.2 NA NA NA
4um9 1 P06756 99.66 0.0 X-RAY
 2014-11-12 SER A:518 A:518 33.0 0.287 B -135.5 148.1 NA NA NA
SER C:518 C:518 35.0 0.304 S -136.6 144.0 35.0 0.304 0.0 HOH
 7.042
 OG
 O
5ner 5 P06756 99.83 0.0 EM
 2017-06-21 SER E:518 A:518 34.0 0.296 B -140.0 140.4 34.0 0.296 0.0
5net 5 P06756 99.83 0.0 EM
 2017-06-21 SER E:518 A:518 35.0 0.304 B -140.0 140.4 35.0 0.304 0.0
5ffg 1 P06756 99.5 0.0 X-RAY
 2017-01-25 SER A:519 A:519 29.0 0.252 S -125.6 147.5 29.0 0.252 0.0 SO4
PEG
HOH
 6.625
6.033
5.731
 C
CB
OG
 O1
O1
O
5ffo 1 P06756 99.5 0.0 X-RAY
 2017-01-25 SER A:519 A:519 41.0 0.357 S -154.3 127.1 41.0 0.357 0.0
SER E:519 E:519 39.0 0.339 S -154.8 126.8 39.0 0.339 0.0
6om1 1 P06756 99.33 0.0 X-RAY
 2019-12-11 SER A:519 A:519 45.0 0.391 S -126.8 153.1 45.0 0.391 0.0 HOH
 6.483
 C
 O
SER C:519 C:519 44.0 0.383 S -127.8 148.2 NA NA NA
SER E:519 E:519 45.0 0.391 S -119.2 150.8 NA NA NA
SER G:519 G:519 47.0 0.409 S -119.2 146.7 NA NA NA
6om2 1 P06756 99.33 0.0 X-RAY
 2019-12-11 SER A:519 A:519 35.0 0.304 S -146.6 155.5 35.0 0.304 0.0 PEG
HOH
 9.531
2.070
 HB3
HG
 O1
O
SER C:519 C:519 39.0 0.339 S -134.8 154.3 39.0 0.339 0.0 HOH
 4.829
 HB3
 O
5nem 5 P06756 99.16 0.0 EM
 2017-06-21 SER E:514 A:518 34.0 0.296 B -140.1 140.4 34.0 0.296 0.0
5neu 5 P06756 99.16 0.0 EM
 2017-06-21 SER E:514 A:518 42.0 0.365 S -154.0 140.5 42.0 0.365 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p06756-f1 1 P06756 99.9 0.0 SER A:548 A:548 32.0 0.278 S -114.9 150.2