Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr2 | 187521057 | . | A | C | CCDS2292.1:NM_002210.4:c.1648Agt>Cgt_NP_002201.1:p.550S>R | Homo sapiens integrin subunit alpha V (ITGAV), transcript variant 1, mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 6uja | 1 | P06756 | 99.9 | 0.0 |
EM |
2020-02-05 | SER | A:520 | A:520 | 60.0 | NA | E | -134.2 | 152.1 | 60.0 | NA | NA | ||||||
| 6ujb | 1 | P06756 | 99.9 | 0.0 |
EM |
2020-02-05 | SER | A:520 | A:520 | 39.0 | NA | E | -138.8 | 151.8 | 39.0 | NA | NA | ||||||
| 6ujc | 1 | P06756 | 99.9 | 0.0 |
EM |
2020-02-05 | SER | A:520 | A:520 | 46.0 | NA | E | -142.7 | 148.6 | 46.0 | NA | NA | ||||||
| 3ije | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2009-09-29 | SER | A:520 | A:520 | 53.0 | 0.461 | E | -107.3 | 142.7 | 53.0 | 0.461 | 0.0 | ||||||
| 6msl | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2019-10-23 | SER | A:520 | A:520 | 48.0 | 0.417 | E | -110.4 | 150.6 | 48.0 | 0.417 | 0.0 | ||||||
| 6msu | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2019-10-23 | SER | A:520 | A:520 | 56.0 | 0.487 | E | -104.6 | 143.3 | 56.0 | 0.487 | 0.0 | ||||||
| 6djp | 1 | P06756 | 99.9 | 0.0 |
EM |
2018-07-25 | SER | A:520 | A:520 | 59.0 | NA | E | -117.9 | 158.0 | 59.0 | NA | NA | ||||||
| 4o02 | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2014-04-02 | SER | A:520 | A:520 | 87.0 | 0.757 | E | -112.8 | 143.2 | 87.0 | 0.757 | 0.0 | ||||||
| 4g1e | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2012-12-12 | SER | A:520 | A:520 | 51.0 | 0.443 | E | -144.8 | 129.4 | 51.0 | 0.443 | 0.0 |
SO4 HOH |
3.149 5.468 |
O OG |
O2 O |
||
| 4g1m | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2012-12-12 | SER | A:520 | A:520 | 55.0 | 0.478 | E | -103.1 | 142.1 | 55.0 | 0.478 | 0.0 |
NAG |
9.289 |
O |
C8 |
||
| 4mmx | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2014-03-26 | SER | A:520 | A:520 | 48.0 | 0.417 | E | -123.7 | 147.7 | 48.0 | 0.417 | 0.0 | ||||||
| 4mmy | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2014-03-26 | SER | A:520 | A:520 | 37.0 | 0.322 | E | -126.4 | 149.3 | 37.0 | 0.322 | 0.0 | ||||||
| 4mmz | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2014-03-26 | SER | A:520 | A:520 | 49.0 | 0.426 | E | -128.8 | 160.3 | 49.0 | 0.426 | 0.0 | ||||||
| 6avq | 1 | P06756 | 100.0 | 0.0 |
EM |
2017-11-01 | SER | A:520 | A:520 | 61.0 | NA | E | -148.9 | 158.9 | 61.0 | NA | NA | ||||||
| 6avr | 1 | P06756 | 100.0 | 0.0 |
EM |
2017-11-01 | SER | A:520 | A:520 | 59.0 | NA | E | -148.8 | 159.1 | 59.0 | NA | NA | ||||||
| 6avu | 1 | P06756 | 100.0 | 0.0 |
EM |
2017-11-01 | SER | A:520 | A:520 | 60.0 | NA | E | -147.1 | 158.5 | 60.0 | NA | NA | ||||||
| 1jv2 | 1 | 14743192 | 99.9 | 0.0 |
X-RAY |
2001-10-17 | SER | A:520 | A:520 | 59.0 | 0.513 | E | -133.4 | 118.7 | 59.0 | 0.513 | 0.0 | ||||||
| 1l5g | 1 | 14743192 | 99.9 | 0.0 |
X-RAY |
2002-04-17 | SER | A:520 | A:520 | 65.0 | 0.565 | E | -125.3 | 90.6 | 65.0 | 0.565 | 0.0 | ||||||
| 1m1x | 1 | 14743192 | 99.9 | 0.0 |
X-RAY |
2002-08-14 | SER | A:520 | A:520 | 59.0 | 0.513 | E | -109.8 | 113.1 | 59.0 | 0.513 | 0.0 | ||||||
| 1u8c | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2004-12-28 | SER | A:520 | A:520 | 46.0 | 0.4 | E | -160.5 | 128.3 | 46.0 | 0.4 | 0.0 | ||||||
| 6mk0 | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2019-09-25 | SER | A:520 | A:520 | 50.0 | 0.435 | E | -136.8 | 162.5 | 50.0 | 0.435 | 0.0 | ||||||
| 6naj | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2019-12-11 | SER | A:520 | A:520 | 51.0 | 0.443 | E | -127.8 | 164.0 | 51.0 | 0.443 | 0.0 | ||||||
| 4um8 | 1 | P06756 | 99.66 | 0.0 |
X-RAY |
2014-11-12 | SER | A:520 | A:520 | 46.0 | 0.4 | E | -103.3 | 159.0 | 46.0 | 0.4 | 0.0 |
HOH |
8.713 |
N |
O |
||
| SER | C:520 | C:520 | 52.0 | 0.452 | E | -103.7 | 155.0 | NA | NA | NA | |||||||||||||
| 4um9 | 1 | P06756 | 99.66 | 0.0 |
X-RAY |
2014-11-12 | SER | A:520 | A:520 | 59.0 | 0.513 | E | -110.9 | 144.1 | NA | NA | NA | ||||||
| SER | C:520 | C:520 | 68.0 | 0.591 | E | -111.3 | 143.3 | 68.0 | 0.591 | 0.0 |
NAG HOH |
9.534 4.492 |
O O |
C8 O |
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| 5ner | 5 | P06756 | 99.83 | 0.0 |
EM |
2017-06-21 | SER | E:520 | A:520 | 59.0 | 0.513 | E | -108.3 | 135.9 | 59.0 | 0.513 | 0.0 |
NAG |
8.827 |
O |
C8 |
||
| 5net | 5 | P06756 | 99.83 | 0.0 |
EM |
2017-06-21 | SER | E:520 | A:520 | 59.0 | 0.513 | E | -108.2 | 135.9 | 59.0 | 0.513 | 0.0 |
NAG |
8.826 |
O |
C8 |
||
| 5ffg | 1 | P06756 | 99.5 | 0.0 |
X-RAY |
2017-01-25 | SER | A:521 | A:521 | 65.0 | 0.565 | E | -113.9 | 145.1 | 65.0 | 0.565 | 0.0 |
NAG SO4 PEG HOH |
9.555 7.024 4.715 4.469 |
O OG O OG |
C8 O3 O1 O |
||
| 5ffo | 1 | P06756 | 99.5 | 0.0 |
X-RAY |
2017-01-25 | SER | A:521 | A:521 | 53.0 | 0.461 | E | -123.1 | 147.0 | 53.0 | 0.461 | 0.0 | ||||||
| SER | E:521 | E:521 | 54.0 | 0.47 | E | -123.4 | 146.0 | 54.0 | 0.47 | 0.0 | |||||||||||||
| 6om1 | 1 | P06756 | 99.33 | 0.0 |
X-RAY |
2019-12-11 | SER | A:521 | A:521 | 55.0 | 0.478 | E | -102.6 | 157.7 | 55.0 | 0.478 | 0.0 |
HOH |
5.335 |
N |
O |
||
| SER | C:521 | C:521 | 54.0 | 0.47 | E | -99.7 | 153.3 | NA | NA | NA | |||||||||||||
| SER | E:521 | E:521 | 50.0 | 0.435 | E | -102.7 | 161.1 | NA | NA | NA | |||||||||||||
| SER | G:521 | G:521 | 52.0 | 0.452 | E | -98.3 | 153.1 | NA | NA | NA | |||||||||||||
| 6om2 | 1 | P06756 | 99.33 | 0.0 |
X-RAY |
2019-12-11 | SER | A:521 | A:521 | 65.0 | 0.565 | E | -98.8 | 156.6 | 65.0 | 0.565 | 0.0 |
PEG HOH |
8.528 3.367 |
O OG |
O1 O |
||
| SER | C:521 | C:521 | 54.0 | 0.47 | E | -109.3 | 159.3 | 54.0 | 0.47 | 0.0 |
HOH |
4.227 |
O |
O |
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| 5nem | 5 | P06756 | 99.16 | 0.0 |
EM |
2017-06-21 | SER | E:516 | A:520 | 59.0 | 0.513 | E | -108.2 | 135.9 | 59.0 | 0.513 | 0.0 |
NAG |
8.827 |
O |
C8 |
||
| 5neu | 5 | P06756 | 99.16 | 0.0 |
EM |
2017-06-21 | SER | E:516 | A:520 | 64.0 | 0.557 | S | -89.4 | 124.7 | 64.0 | 0.557 | 0.0 | ||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p06756-f1 | 1 | P06756 | 99.9 | 0.0 | SER | A:550 | A:550 | 50.0 | 0.435 | E | -106.0 | 141.9 | |