Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr2 | 187521064 | . | C | A | CCDS2292.1:NM_002210.4:c.1655tCc>tAc_NP_002201.1:p.552S>Y | Homo sapiens integrin subunit alpha V (ITGAV), transcript variant 1, mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 6uja | 1 | P06756 | 99.9 | 0.0 |
EM |
2020-02-05 | SER | A:522 | A:522 | 87.0 | NA | E | -137.6 | 156.2 | 87.0 | NA | NA | ||||||
| 6ujb | 1 | P06756 | 99.9 | 0.0 |
EM |
2020-02-05 | SER | A:522 | A:522 | 77.0 | 0.67 | E | -129.0 | 155.5 | 77.0 | 0.67 | 0.0 | ||||||
| 6ujc | 1 | P06756 | 99.9 | 0.0 |
EM |
2020-02-05 | SER | A:522 | A:522 | 72.0 | 0.626 | E | -127.7 | 153.0 | 72.0 | 0.626 | 0.0 | ||||||
| 3ije | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2009-09-29 | SER | A:522 | A:522 | 64.0 | 0.557 | E | -107.7 | 166.9 | 64.0 | 0.557 | 0.0 |
NAG |
5.139 |
CB |
C8 |
||
| 6msl | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2019-10-23 | SER | A:522 | A:522 | 69.0 | 0.6 | E | -134.0 | 151.0 | 69.0 | 0.6 | 0.0 |
NAG |
6.114 |
O |
C8 |
||
| 6msu | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2019-10-23 | SER | A:522 | A:522 | 74.0 | 0.643 | E | -131.4 | 149.6 | 74.0 | 0.643 | 0.0 |
NAG |
6.239 |
O |
C8 |
||
| 6djp | 1 | P06756 | 99.9 | 0.0 |
EM |
2018-07-25 | SER | A:522 | A:522 | 92.0 | NA | E | -130.0 | 152.1 | 92.0 | NA | NA |
NAG |
3.853 |
CB |
C8 |
||
| 4o02 | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2014-04-02 | SER | A:522 | A:522 | 76.0 | NA | E | -108.9 | 165.4 | 76.0 | NA | NA |
NAG |
9.828 |
CB |
O5 |
||
| 4g1e | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2012-12-12 | SER | A:522 | A:522 | 79.0 | 0.687 | E | -104.7 | 117.5 | 79.0 | 0.687 | 0.0 |
NAG SO4 |
3.929 3.275 |
OG N |
C8 O1 |
||
| 4g1m | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2012-12-12 | SER | A:522 | A:522 | 55.0 | 0.478 | E | -96.4 | 170.1 | 55.0 | 0.478 | 0.0 |
NAG |
3.852 |
CB |
C8 |
||
| 4mmx | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2014-03-26 | SER | A:522 | A:522 | 67.0 | 0.583 | E | -133.5 | 149.3 | 67.0 | 0.583 | 0.0 |
NAG |
4.506 |
O |
C8 |
||
| 4mmy | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2014-03-26 | SER | A:522 | A:522 | 73.0 | 0.635 | E | -120.8 | 145.9 | 73.0 | 0.635 | 0.0 |
NAG |
4.245 |
O |
C8 |
||
| 4mmz | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2014-03-26 | SER | A:522 | A:522 | 63.0 | 0.548 | E | -126.9 | 150.9 | 63.0 | 0.548 | 0.0 | ||||||
| 6avq | 1 | P06756 | 100.0 | 0.0 |
EM |
2017-11-01 | SER | A:522 | A:522 | 83.0 | NA | E | -146.7 | 157.5 | 83.0 | NA | NA | ||||||
| 6avr | 1 | P06756 | 100.0 | 0.0 |
EM |
2017-11-01 | SER | A:522 | A:522 | 83.0 | NA | E | -146.6 | 157.4 | 83.0 | NA | NA | ||||||
| 6avu | 1 | P06756 | 100.0 | 0.0 |
EM |
2017-11-01 | SER | A:522 | A:522 | 83.0 | NA | E | -145.7 | 156.9 | 83.0 | NA | NA | ||||||
| 1jv2 | 1 | 14743192 | 99.9 | 0.0 |
X-RAY |
2001-10-17 | SER | A:522 | A:522 | 80.0 | 0.696 | E | -103.1 | 147.3 | 80.0 | 0.696 | 0.0 | ||||||
| 1l5g | 1 | 14743192 | 99.9 | 0.0 |
X-RAY |
2002-04-17 | SER | A:522 | A:522 | 69.0 | 0.6 | E | -115.1 | 155.5 | 69.0 | 0.6 | 0.0 | ||||||
| 1m1x | 1 | 14743192 | 99.9 | 0.0 |
X-RAY |
2002-08-14 | SER | A:522 | A:522 | 83.0 | 0.722 | E | -110.5 | 147.5 | 83.0 | 0.722 | 0.0 | ||||||
| 1u8c | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2004-12-28 | SER | A:522 | A:522 | 59.0 | 0.513 | E | -143.1 | 176.3 | 59.0 | 0.513 | 0.0 | ||||||
| 6mk0 | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2019-09-25 | SER | A:522 | A:522 | 59.0 | 0.513 | E | -133.5 | 151.6 | 59.0 | 0.513 | 0.0 | ||||||
| 6naj | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2019-12-11 | SER | A:522 | A:522 | 57.0 | 0.496 | E | -129.9 | 148.1 | 57.0 | 0.496 | 0.0 | ||||||
| 4um8 | 1 | P06756 | 99.66 | 0.0 |
X-RAY |
2014-11-12 | SER | A:522 | A:522 | 64.0 | 0.557 | E | -98.3 | 138.4 | 64.0 | 0.557 | 0.0 |
NAG NAG HOH |
5.948 9.707 7.552 |
OG OG O |
N2 O7 O |
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| SER | C:522 | C:522 | 64.0 | 0.557 | E | -96.9 | 139.7 | NA | NA | NA | |||||||||||||
| 4um9 | 1 | P06756 | 99.66 | 0.0 |
X-RAY |
2014-11-12 | SER | A:522 | A:522 | 62.0 | 0.539 | E | -105.5 | 146.6 | NA | NA | NA | ||||||
| SER | C:522 | C:522 | 78.0 | 0.678 | E | -105.4 | 147.0 | 78.0 | 0.678 | 0.0 |
NAG HOH |
3.286 3.026 |
OG N |
C8 O |
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| 5ner | 5 | P06756 | 99.83 | 0.0 |
EM |
2017-06-21 | SER | E:522 | A:522 | 67.0 | 0.583 | E | -115.0 | 150.3 | 67.0 | 0.583 | 0.0 |
NAG |
3.091 |
O |
C8 |
||
| 5net | 5 | P06756 | 99.83 | 0.0 |
EM |
2017-06-21 | SER | E:522 | A:522 | 66.0 | 0.574 | E | -114.9 | 150.3 | 66.0 | 0.574 | 0.0 |
NAG |
3.091 |
O |
C8 |
||
| 5ffg | 1 | P06756 | 99.5 | 0.0 |
X-RAY |
2017-01-25 | SER | A:523 | A:523 | 73.0 | 0.635 | E | -108.8 | 148.9 | 73.0 | 0.635 | 0.0 |
NAG NAG PEG HOH |
3.761 9.789 5.650 3.776 |
O CB N CB |
C8 O5 O1 O |
||
| 5ffo | 1 | P06756 | 99.5 | 0.0 |
X-RAY |
2017-01-25 | SER | A:523 | A:523 | 67.0 | 0.583 | E | -101.4 | 145.0 | 67.0 | 0.583 | 0.0 |
NAG |
4.808 |
O |
C8 |
||
| SER | E:523 | E:523 | 62.0 | 0.539 | E | -101.2 | 145.0 | 62.0 | 0.539 | 0.0 |
NAG |
4.460 |
O |
C8 |
|||||||||
| 6om1 | 1 | P06756 | 99.33 | 0.0 |
X-RAY |
2019-12-11 | SER | A:523 | A:523 | 58.0 | 0.504 | E | -106.6 | 156.1 | 58.0 | 0.504 | 0.0 | ||||||
| SER | C:523 | C:523 | 63.0 | 0.548 | E | -132.5 | 147.8 | NA | NA | NA | |||||||||||||
| SER | E:523 | E:523 | 68.0 | 0.591 | E | -116.3 | 153.5 | NA | NA | NA | |||||||||||||
| SER | G:523 | G:523 | 59.0 | 0.513 | E | -118.1 | 152.1 | NA | NA | NA | |||||||||||||
| 6om2 | 1 | P06756 | 99.33 | 0.0 |
X-RAY |
2019-12-11 | SER | A:523 | A:523 | 80.0 | 0.696 | E | -95.1 | 157.7 | 80.0 | 0.696 | 0.0 |
NAG PEG HOH |
7.027 6.749 7.837 |
HB3 O O |
O5 O1 O |
||
| SER | C:523 | C:523 | 66.0 | 0.574 | E | -114.8 | 134.5 | 66.0 | 0.574 | 0.0 |
NAG HOH |
8.826 5.469 |
HB3 H |
C8 O |
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| 5nem | 5 | P06756 | 99.16 | 0.0 |
EM |
2017-06-21 | SER | E:518 | A:522 | 68.0 | 0.591 | E | -115.0 | 150.2 | 68.0 | 0.591 | 0.0 |
NAG |
3.091 |
O |
C8 |
||
| 5neu | 5 | P06756 | 99.16 | 0.0 |
EM |
2017-06-21 | SER | E:518 | A:522 | 79.0 | 0.687 | E | -112.7 | 126.9 | 79.0 | 0.687 | 0.0 | ||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p06756-f1 | 1 | P06756 | 99.9 | 0.0 | SER | A:552 | A:552 | 71.0 | 0.617 | E | -106.8 | 144.1 | |