Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr2 | 187521118 | . | C | A | CCDS2292.1:NM_002210.4:c.1709gCg>gAg_NP_002201.1:p.570A>E | Homo sapiens integrin subunit alpha V (ITGAV), transcript variant 1, mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 6uja | 1 | P06756 | 99.9 | 0.0 |
EM |
2020-02-05 | ALA | A:540 | A:540 | 24.0 | 0.209 | E | -118.7 | 155.3 | 24.0 | 0.209 | 0.0 | ||||||
| 6ujb | 1 | P06756 | 99.9 | 0.0 |
EM |
2020-02-05 | ALA | A:540 | A:540 | 22.0 | 0.191 | E | -110.5 | 152.6 | 22.0 | 0.191 | 0.0 | ||||||
| 6ujc | 1 | P06756 | 99.9 | 0.0 |
EM |
2020-02-05 | ALA | A:540 | A:540 | 18.0 | 0.157 | E | -107.9 | 154.1 | 18.0 | 0.157 | 0.0 | ||||||
| 3ije | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2009-09-29 | ALA | A:540 | A:540 | 0.0 | 0.0 | E | -113.4 | 139.1 | 0.0 | 0.0 | 0.0 |
NAG |
7.696 |
O |
O6 |
||
| 6msl | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2019-10-23 | ALA | A:540 | A:540 | 0.0 | 0.0 | E | -108.4 | 166.5 | 0.0 | 0.0 | 0.0 |
NAG NAG |
7.293 8.065 |
O O |
O6 C8 |
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| 6msu | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2019-10-23 | ALA | A:540 | A:540 | 0.0 | 0.0 | E | -114.8 | 160.7 | 0.0 | 0.0 | 0.0 |
NAG NAG |
6.457 7.651 |
O O |
O6 C8 |
||
| 6djp | 1 | P06756 | 99.9 | 0.0 |
EM |
2018-07-25 | ALA | A:540 | A:540 | 23.0 | 0.2 | E | -109.9 | 151.6 | 23.0 | 0.2 | 0.0 | ||||||
| 4o02 | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2014-04-02 | ALA | A:540 | A:540 | 40.0 | 0.348 | E | -113.9 | 138.5 | 40.0 | 0.348 | 0.0 | ||||||
| 4g1e | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2012-12-12 | ALA | A:540 | A:540 | 0.0 | 0.0 | E | -126.1 | 160.9 | 0.0 | 0.0 | 0.0 |
NAG NAG |
6.367 7.177 |
O O |
O6 C8 |
||
| 4g1m | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2012-12-12 | ALA | A:540 | A:540 | 0.0 | 0.0 | E | -115.4 | 131.3 | 0.0 | 0.0 | 0.0 |
NAG |
7.489 |
O |
O6 |
||
| 4mmx | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2014-03-26 | ALA | A:540 | A:540 | 0.0 | 0.0 | E | -114.8 | 127.3 | 0.0 | 0.0 | 0.0 |
NAG NAG |
6.855 8.378 |
O N |
O6 C8 |
||
| 4mmy | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2014-03-26 | ALA | A:540 | A:540 | 0.0 | 0.0 | E | -118.7 | 157.8 | 0.0 | 0.0 | 0.0 |
NAG NAG |
6.800 8.094 |
O O |
O6 C8 |
||
| 4mmz | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2014-03-26 | ALA | A:540 | A:540 | 0.0 | 0.0 | 34.9 | 72.8 | 0.0 | 0.0 | 0.0 |
NAG NAG |
7.414 9.711 |
O O |
O6 N2 |
|||
| 6avq | 1 | P06756 | 100.0 | 0.0 |
EM |
2017-11-01 | ALA | A:540 | A:540 | 33.0 | 0.287 | E | -94.1 | 144.5 | 33.0 | 0.287 | 0.0 | ||||||
| 6avr | 1 | P06756 | 100.0 | 0.0 |
EM |
2017-11-01 | ALA | A:540 | A:540 | 32.0 | 0.278 | E | -94.8 | 144.8 | 32.0 | 0.278 | 0.0 | ||||||
| 6avu | 1 | P06756 | 100.0 | 0.0 |
EM |
2017-11-01 | ALA | A:540 | A:540 | 31.0 | 0.27 | E | -93.3 | 145.0 | 31.0 | 0.27 | 0.0 | ||||||
| 1jv2 | 1 | 14743192 | 99.9 | 0.0 |
X-RAY |
2001-10-17 | ALA | A:540 | A:540 | 0.0 | 0.0 | E | -130.8 | 148.3 | 0.0 | 0.0 | 0.0 |
NAG |
7.291 |
O |
O5 |
||
| 1l5g | 1 | 14743192 | 99.9 | 0.0 |
X-RAY |
2002-04-17 | ALA | A:540 | A:540 | 0.0 | 0.0 | E | -119.7 | 142.0 | 0.0 | 0.0 | 0.0 |
NAG |
7.040 |
O |
O6 |
||
| 1m1x | 1 | 14743192 | 99.9 | 0.0 |
X-RAY |
2002-08-14 | ALA | A:540 | A:540 | 0.0 | 0.0 | E | -137.2 | 143.1 | 0.0 | 0.0 | 0.0 |
NAG |
6.918 |
O |
O6 |
||
| 1u8c | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2004-12-28 | ALA | A:540 | A:540 | 0.0 | 0.0 | E | -133.9 | 138.2 | 0.0 | 0.0 | 0.0 |
NAG |
8.190 |
O |
C8 |
||
| 6mk0 | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2019-09-25 | ALA | A:540 | A:540 | 0.0 | 0.0 | E | -115.5 | 141.8 | 0.0 | 0.0 | 0.0 |
NAG |
7.521 |
O |
O6 |
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| 6naj | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2019-12-11 | ALA | A:540 | A:540 | 0.0 | 0.0 | 32.3 | 62.0 | 0.0 | 0.0 | 0.0 |
NAG NAG |
7.453 9.947 |
O O |
O6 N2 |
|||
| 4um8 | 1 | P06756 | 99.66 | 0.0 |
X-RAY |
2014-11-12 | ALA | A:540 | A:540 | 0.0 | 0.0 | E | -121.6 | 142.0 | 0.0 | 0.0 | 0.0 |
NAG NAG HOH |
6.528 6.858 7.829 |
O O N |
O6 C8 O |
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| ALA | C:540 | C:540 | 0.0 | 0.0 | E | -121.2 | 142.3 | NA | NA | NA | |||||||||||||
| 4um9 | 1 | P06756 | 99.66 | 0.0 |
X-RAY |
2014-11-12 | ALA | A:540 | A:540 | 0.0 | 0.0 | E | -122.4 | 158.1 | NA | NA | NA | ||||||
| ALA | C:540 | C:540 | 0.0 | 0.0 | E | -122.1 | 158.7 | 0.0 | 0.0 | 0.0 |
NAG NAG |
6.849 7.487 |
O O |
O6 C8 |
|||||||||
| 5ner | 5 | P06756 | 99.83 | 0.0 |
EM |
2017-06-21 | ALA | E:540 | A:540 | 0.0 | 0.0 | E | -114.4 | 152.3 | 0.0 | 0.0 | 0.0 |
NAG NAG |
6.487 6.552 |
O O |
O6 C8 |
||
| 5net | 5 | P06756 | 99.83 | 0.0 |
EM |
2017-06-21 | ALA | E:540 | A:540 | 0.0 | 0.0 | E | -114.5 | 152.3 | 0.0 | 0.0 | 0.0 |
NAG NAG |
6.486 6.553 |
O O |
O6 C8 |
||
| 5ffg | 1 | P06756 | 99.5 | 0.0 |
X-RAY |
2017-01-25 | ALA | A:541 | A:541 | 0.0 | 0.0 | E | -122.8 | 159.3 | 0.0 | 0.0 | 0.0 |
NAG NAG PEG HOH |
6.855 9.702 9.229 4.863 |
O O N N |
O6 C8 C2 O |
||
| 5ffo | 1 | P06756 | 99.5 | 0.0 |
X-RAY |
2017-01-25 | ALA | A:541 | A:541 | 0.0 | 0.0 | E | -122.8 | 153.6 | 0.0 | 0.0 | 0.0 |
NAG NAG |
6.561 9.208 |
O O |
O6 C8 |
||
| ALA | E:541 | E:541 | 0.0 | 0.0 | E | -120.2 | 152.8 | 0.0 | 0.0 | 0.0 |
NAG NAG |
6.855 9.326 |
O O |
O6 C8 |
|||||||||
| 6om1 | 1 | P06756 | 99.33 | 0.0 |
X-RAY |
2019-12-11 | ALA | A:541 | A:541 | 0.0 | 0.0 | E | -136.4 | 141.5 | 0.0 | 0.0 | 0.0 |
NAG NAG HOH |
7.347 7.861 5.029 |
O H N |
O6 C8 O |
||
| ALA | C:541 | C:541 | 0.0 | 0.0 | E | -124.2 | 138.3 | NA | NA | NA | |||||||||||||
| ALA | E:541 | E:541 | 0.0 | 0.0 | E | -135.5 | 142.5 | NA | NA | NA | |||||||||||||
| ALA | G:541 | G:541 | 0.0 | 0.0 | E | -137.8 | 139.6 | NA | NA | NA | |||||||||||||
| 6om2 | 1 | P06756 | 99.33 | 0.0 |
X-RAY |
2019-12-11 | ALA | A:541 | A:541 | 0.0 | 0.0 | E | -111.1 | 168.2 | 0.0 | 0.0 | 0.0 |
NAG PEG HOH |
6.108 9.258 5.701 |
O HA N |
O6 O1 O |
||
| ALA | C:541 | C:541 | 0.0 | 0.0 | E | -120.7 | 170.4 | 0.0 | 0.0 | 0.0 |
NAG NAG MAN HOH |
6.927 9.766 7.633 6.140 |
O O H HA |
O6 N2 O6 O |
|||||||||
| 5nem | 5 | P06756 | 99.16 | 0.0 |
EM |
2017-06-21 | ALA | E:536 | A:540 | 0.0 | 0.0 | E | -114.5 | 152.3 | 0.0 | 0.0 | 0.0 |
NAG NAG |
6.487 6.553 |
O O |
O6 C8 |
||
| 5neu | 5 | P06756 | 99.16 | 0.0 |
EM |
2017-06-21 | ALA | E:536 | A:540 | 0.0 | 0.0 | E | -132.5 | 125.9 | 0.0 | 0.0 | 0.0 | ||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p06756-f1 | 1 | P06756 | 99.9 | 0.0 | ALA | A:570 | A:570 | 0.0 | 0.0 | E | -109.4 | 158.4 | |