Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 187529249 . G A CCDS2292.1:NM_002210.4:c.1954Gac>Aac_NP_002201.1:p.652D>N Homo sapiens integrin subunit alpha V (ITGAV), transcript variant 1, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6uja 1 P06756 99.9 0.0 EM
2020-02-05 ASP A:622 NA:NA DO NA DO DO DO NA NA NA
6ujb 1 P06756 99.9 0.0 EM
2020-02-05 ASP A:622 NA:NA DO NA DO DO DO NA NA NA
6ujc 1 P06756 99.9 0.0 EM
2020-02-05 ASP A:622 NA:NA DO NA DO DO DO NA NA NA
3ije 1 P06756 99.9 0.0 X-RAY
2009-09-29 ASP A:622 A:622 91.0 0.607 -70.2 147.6 91.0 0.607 0.0 NAG
NAG
BMA
7.847
4.913
5.534
OD2
O
O
C4
C6
C1
6msl 1 P06756 99.9 0.0 X-RAY
2019-10-23 ASP A:622 A:622 93.0 0.62 -98.4 103.4 93.0 0.62 0.0 NAG
NAG
BMA
7.888
5.611
4.065
O
O
O
O4
C3
O5
6msu 1 P06756 99.9 0.0 X-RAY
2019-10-23 ASP A:622 A:622 91.0 0.607 -107.7 94.7 91.0 0.607 0.0 NAG
NAG
BMA
7.378
5.404
3.901
O
O
O
O4
O5
O5
6djp 1 P06756 99.9 0.0 EM
2018-07-25 ASP A:622 NA:NA DO NA DO DO DO NA NA NA
4o02 1 P06756 99.9 0.0 X-RAY
2014-04-02 ASP A:622 A:622 100.0 NA S 41.2 68.2 100.0 NA NA NAG
7.336
CB
O3
4g1e 1 P06756 99.9 0.0 X-RAY
2012-12-12 ASP A:622 A:622 80.0 0.533 -96.3 114.8 55.0 0.367 0.166 B:P05106:0.167
NAG
NAG
BMA
HOH
7.059
5.587
6.551
2.314
O
O
O
O
O6
C3
O5
O
4g1m 1 P06756 99.9 0.0 X-RAY
2012-12-12 ASP A:622 A:622 93.0 0.62 E -85.1 129.9 87.0 0.58 0.04 B:P05106:0.04
NAG
NAG
BMA
6.689
4.603
4.456
OD2
O
O
O6
O4
O2
4mmx 1 P06756 99.9 0.0 X-RAY
2014-03-26 ASP A:622 A:622 91.0 0.607 -104.9 129.3 91.0 0.607 0.0 NAG
NAG
BMA
7.630
5.661
4.376
OD2
O
O
O3
C3
O5
4mmy 1 P06756 99.9 0.0 X-RAY
2014-03-26 ASP A:622 A:622 92.0 0.613 -102.3 109.6 91.0 0.607 0.006 B:P05106:0.007
NAG
NAG
BMA
7.662
5.503
4.544
OD2
O
O
O3
O5
O5
4mmz 1 P06756 99.9 0.0 X-RAY
2014-03-26 ASP A:622 A:622 101.0 0.673 -69.2 160.2 101.0 0.673 0.0 NAG
NAG
BMA
6.518
5.050
3.765
OD2
C
O
O3
C8
O5
6avq 1 P06756 100.0 0.0 EM
2017-11-01 ASP A:622 A:622 80.0 NA -94.4 95.5 80.0 NA NA
6avr 1 P06756 100.0 0.0 EM
2017-11-01 ASP A:622 A:622 80.0 NA -94.0 94.7 80.0 NA NA
6avu 1 P06756 100.0 0.0 EM
2017-11-01 ASP A:622 A:622 80.0 NA -90.9 104.3 80.0 NA NA
1jv2 1 14743192 99.9 0.0 X-RAY
2001-10-17 ASP A:622 A:622 98.0 0.653 -64.9 100.3 98.0 0.653 0.0 NAG
NDG
5.409
3.961
OD2
O
C8
C5
1l5g 1 14743192 99.9 0.0 X-RAY
2002-04-17 ASP A:622 A:622 98.0 0.653 -95.7 102.0 98.0 0.653 0.0 NAG
NDG
6.268
3.274
OD1
O
C8
O6
1m1x 1 14743192 99.9 0.0 X-RAY
2002-08-14 ASP A:622 A:622 89.0 0.593 -82.1 116.3 89.0 0.593 0.0 NAG
NDG
6.540
3.976
OD1
OD1
C8
O6
1u8c 1 P06756 99.9 0.0 X-RAY
2004-12-28 ASP A:622 A:622 88.0 0.587 -86.8 102.4 83.0 0.553 0.034 B:P05106:0.033
NAG
NDG
7.158
4.836
OD2
O
C8
O4
6mk0 1 P06756 99.9 0.0 X-RAY
2019-09-25 ASP A:622 A:622 106.0 0.707 -79.4 131.3 106.0 0.707 0.0 NAG
NAG
BMA
6.406
5.086
4.665
OD1
OD1
O
O3
C5
O5
6naj 1 P06756 99.9 0.0 X-RAY
2019-12-11 ASP A:622 A:622 102.0 0.68 -70.7 152.6 102.0 0.68 0.0 NAG
NAG
BMA
6.482
5.249
3.974
OD1
OD1
O
O3
C8
O5

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p06756-f1 1 P06756 99.9 0.0 ASP A:652 A:652 97.0 0.647 -82.1 108.2