Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr2 | 187529348 | . | G | A | CCDS2292.1:NM_002210.4:c.2053Ggg>Agg_NP_002201.1:p.685G>R | Homo sapiens integrin subunit alpha V (ITGAV), transcript variant 1, mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 6uja | 1 | P06756 | 99.9 | 0.0 |
EM |
2020-02-05 | GLY | A:655 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 6ujb | 1 | P06756 | 99.9 | 0.0 |
EM |
2020-02-05 | GLY | A:655 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 6ujc | 1 | P06756 | 99.9 | 0.0 |
EM |
2020-02-05 | GLY | A:655 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 3ije | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2009-09-29 | GLY | A:655 | A:655 | 13.0 | 0.173 | E | 168.3 | 173.5 | 7.0 | 0.093 | 0.08 |
B:P05106:0.08 |
NAG NAG |
7.937 8.685 |
N N |
O6 C8 |
|
| 6msl | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2019-10-23 | GLY | A:655 | A:655 | 15.0 | 0.2 | E | 163.2 | 170.0 | 8.0 | 0.107 | 0.093 |
B:P05106:0.093 |
NAG NAG |
8.275 7.746 |
N N |
O6 C8 |
|
| 6msu | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2019-10-23 | GLY | A:655 | A:655 | 15.0 | 0.2 | E | 158.5 | -178.4 | 8.0 | 0.107 | 0.093 |
B:P05106:0.093 |
NAG NAG |
8.102 7.756 |
N N |
O6 C8 |
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| 6djp | 1 | P06756 | 99.9 | 0.0 |
EM |
2018-07-25 | GLY | A:655 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 4o02 | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2014-04-02 | GLY | A:655 | A:655 | 41.0 | 0.547 | E | 168.8 | 174.2 | 33.0 | 0.44 | 0.107 |
B:P05106:0.107 |
NAG |
6.600 |
N |
O6 |
|
| 4g1e | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2012-12-12 | GLY | A:655 | A:655 | 25.0 | 0.333 | E | 152.4 | 174.8 | 6.0 | 0.08 | 0.253 |
B:P05106:0.253 |
NAG NAG |
8.467 8.214 |
N N |
O6 C8 |
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| 4g1m | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2012-12-12 | GLY | A:655 | A:655 | 15.0 | 0.2 | E | 165.9 | 168.8 | 9.0 | 0.12 | 0.08 |
B:P05106:0.08 |
NAG NAG |
8.613 8.794 |
N N |
C6 O7 |
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| 4mmx | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2014-03-26 | GLY | A:655 | A:655 | 18.0 | 0.24 | E | -177.4 | -162.9 | 8.0 | 0.107 | 0.133 |
B:P05106:0.133 |
NAG NAG |
7.829 7.240 |
N N |
O6 C8 |
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| 4mmy | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2014-03-26 | GLY | A:655 | A:655 | 16.0 | 0.213 | E | 174.0 | -172.7 | 6.0 | 0.08 | 0.133 |
B:P05106:0.133 |
NAG NAG |
8.219 7.574 |
N N |
O6 C8 |
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| 4mmz | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2014-03-26 | GLY | A:655 | A:655 | 40.0 | 0.533 | 49.7 | -141.7 | 6.0 | 0.08 | 0.453 |
B:P05106:0.453 |
NAG NAG |
8.201 8.888 |
N N |
O6 O7 |
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| 6avq | 1 | P06756 | 100.0 | 0.0 |
EM |
2017-11-01 | GLY | A:655 | A:655 | 32.0 | 0.427 | E | 158.8 | -169.9 | 23.0 | 0.307 | 0.12 |
B:P05106:0.12 |
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| 6avr | 1 | P06756 | 100.0 | 0.0 |
EM |
2017-11-01 | GLY | A:655 | A:655 | 32.0 | 0.427 | E | 159.3 | -170.8 | 31.0 | 0.413 | 0.014 |
B:P05106:0.013 |
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| 6avu | 1 | P06756 | 100.0 | 0.0 |
EM |
2017-11-01 | GLY | A:655 | A:655 | 34.0 | 0.453 | E | 163.5 | -171.8 | 34.0 | 0.453 | 0.0 | ||||||
| 1jv2 | 1 | 14743192 | 99.9 | 0.0 |
X-RAY |
2001-10-17 | GLY | A:655 | A:655 | 16.0 | 0.213 | E | -175.3 | -174.1 | 13.0 | 0.173 | 0.04 |
B:2443452:0.04 |
NAG NDG |
7.775 8.337 |
N N |
O7 C8 |
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| 1l5g | 1 | 14743192 | 99.9 | 0.0 |
X-RAY |
2002-04-17 | GLY | A:655 | A:655 | 14.0 | 0.187 | E | 175.2 | -159.4 | 14.0 | 0.187 | 0.0 |
NAG NDG |
8.162 8.462 |
N N |
O7 C8 |
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| 1m1x | 1 | 14743192 | 99.9 | 0.0 |
X-RAY |
2002-08-14 | GLY | A:655 | A:655 | 13.0 | 0.173 | E | -178.2 | -168.8 | 13.0 | 0.173 | 0.0 |
NAG NDG |
7.523 8.267 |
N N |
O7 C8 |
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| 1u8c | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2004-12-28 | GLY | A:655 | A:655 | 13.0 | 0.173 | E | -174.0 | -179.4 | 6.0 | 0.08 | 0.093 |
B:P05106:0.093 |
NAG NDG |
7.312 8.031 |
N N |
O7 C8 |
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| 6mk0 | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2019-09-25 | GLY | A:655 | A:655 | 46.0 | 0.613 | 58.0 | 179.6 | 7.0 | 0.093 | 0.52 |
B:P05106:0.52 |
NAG NAG |
8.075 8.077 |
N N |
O6 O7 |
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| 6naj | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2019-12-11 | GLY | A:655 | A:655 | 42.0 | 0.56 | E | 54.9 | -171.2 | 7.0 | 0.093 | 0.467 |
B:P05106:0.467 |
NAG NAG |
8.284 8.914 |
N N |
O6 O7 |
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AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p06756-f1 | 1 | P06756 | 99.9 | 0.0 | GLY | A:685 | A:685 | 18.0 | 0.24 | E | 152.4 | 179.4 | |