Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 187533499 . A C CCDS2292.1:NM_002210.4:c.2444aAt>aCt_NP_002201.1:p.815N>T Homo sapiens integrin subunit alpha V (ITGAV), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6uja 1 P06756 99.9 0.0 EM
 2020-02-05 ASN A:785 NA:NA DO NA DO DO DO NA NA NA
6ujb 1 P06756 99.9 0.0 EM
 2020-02-05 ASN A:785 NA:NA DO NA DO DO DO NA NA NA
6ujc 1 P06756 99.9 0.0 EM
 2020-02-05 ASN A:785 NA:NA DO NA DO DO DO NA NA NA
3ije 1 P06756 99.9 0.0 X-RAY
 2009-09-29 ASN A:785 A:785 67.0 0.419 -82.1 -42.1 67.0 0.419 0.0 NAG
BMA
 9.798
7.689
 ND2
O
 O5
O6
6msl 1 P06756 99.9 0.0 X-RAY
 2019-10-23 ASN A:785 A:785 64.0 0.4 -104.4 -31.8 64.0 0.4 0.0 NAG
BMA
 9.556
7.154
 ND2
O
 O3
O6
6msu 1 P06756 99.9 0.0 X-RAY
 2019-10-23 ASN A:785 A:785 71.0 0.444 -109.4 -40.2 71.0 0.444 0.0 BMA
 7.757
 O
 O6
6djp 1 P06756 99.9 0.0 EM
 2018-07-25 ASN A:785 NA:NA DO NA DO DO DO NA NA NA
4o02 1 P06756 99.9 0.0 X-RAY
 2014-04-02 ASN A:785 A:785 62.0 NA E -133.4 117.2 62.0 NA NA NAG
 9.528
 O
 O6
4g1e 1 P06756 99.9 0.0 X-RAY
 2012-12-12 ASN A:785 A:785 72.0 0.45 -85.7 -39.8 72.0 0.45 0.0 NAG
BMA
HOH
 9.950
8.216
3.541
 ND2
O
O
 O5
O2
O
4g1m 1 P06756 99.9 0.0 X-RAY
 2012-12-12 ASN A:785 A:785 70.0 0.438 -79.1 -30.2 70.0 0.438 0.0 NAG
BMA
 9.825
9.101
 ND2
O
 O5
O3
4mmx 1 P06756 99.9 0.0 X-RAY
 2014-03-26 ASN A:785 A:785 74.0 0.463 -107.1 -60.5 74.0 0.463 0.0 NAG
BMA
 9.588
8.029
 OD1
O
 O3
O6
4mmy 1 P06756 99.9 0.0 X-RAY
 2014-03-26 ASN A:785 A:785 72.0 0.45 -103.2 -60.1 72.0 0.45 0.0 BMA
 7.993
 O
 O6
4mmz 1 P06756 99.9 0.0 X-RAY
 2014-03-26 ASN A:785 A:785 75.0 0.469 -97.0 -58.6 75.0 0.469 0.0 BMA
 7.623
 O
 O6
6avq 1 P06756 100.0 0.0 EM
 2017-11-01 ASN A:785 A:785 81.0 NA -90.4 -31.4 81.0 NA NA
6avr 1 P06756 100.0 0.0 EM
 2017-11-01 ASN A:785 A:785 80.0 NA -88.1 -32.4 80.0 NA NA
6avu 1 P06756 100.0 0.0 EM
 2017-11-01 ASN A:785 A:785 79.0 NA -89.3 -32.6 79.0 NA NA
1jv2 1 14743192 99.9 0.0 X-RAY
 2001-10-17 ASN A:785 A:785 59.0 0.369 -109.2 -35.0 51.0 0.319 0.05 B:2443452:0.05
 NAG
 7.303
 ND2
 O6
1l5g 1 14743192 99.9 0.0 X-RAY
 2002-04-17 ASN A:785 A:785 64.0 0.4 -109.0 -45.0 51.0 0.319 0.081 B:P05106:0.081
 NAG
 7.601
 ND2
 O6
1m1x 1 14743192 99.9 0.0 X-RAY
 2002-08-14 ASN A:785 A:785 64.0 0.4 -111.5 -19.0 50.0 0.312 0.088 B:P05106:0.087
 NAG
 7.897
 ND2
 O6
1u8c 1 P06756 99.9 0.0 X-RAY
 2004-12-28 ASN A:785 A:785 63.0 0.394 -99.8 -43.6 55.0 0.344 0.05 B:P05106:0.05
 NAG
 9.756
 ND2
 O5
6mk0 1 P06756 99.9 0.0 X-RAY
 2019-09-25 ASN A:785 A:785 67.0 0.419 -76.0 -29.3 67.0 0.419 0.0 BMA
NAG
 7.972
8.856
 O
ND2
 O6
O6
6naj 1 P06756 99.9 0.0 X-RAY
 2019-12-11 ASN A:785 A:785 70.0 0.438 -89.2 -25.6 70.0 0.438 0.0 BMA
 7.475
 O
 O6

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p06756-f1 1 P06756 99.9 0.0 ASN A:815 A:815 72.0 0.45 -90.2 -11.3