Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 242794796 . A C CCDS33428.1:NM_005018.2:c.413cTg>cGg_NP_005009.2:p.138L>R Homo sapiens programmed cell death 1 (PDCD1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5wt9 3 Q15116 100.0 4e-121 X-RAY
 2017-02-15 LEU C:138 G:138 148.0 0.871 -61.2 170.3 148.0 0.871 0.0 HOH
 9.574
 N
 O
6jbt 1 Q15116 100.0 1e-107 X-RAY
 2019-06-19 LEU A:119 F:119 149.0 0.876 -69.6 156.0 149.0 0.876 0.0 HOH
 3.329
 N
 O
6jjp 3 Q15116 100.0 5e-105 X-RAY
 2019-10-30 LEU C:118 C:138 147.0 0.865 -66.0 153.2 147.0 0.865 0.0
LEU F:118 F:138 151.0 0.888 -64.9 155.3 NA NA NA
7cgw 3 Q15116 100.0 4e-103 X-RAY
 2021-04-07 LEU C:114 C:138 119.0 0.7 -97.9 160.8 119.0 0.7 0.0
LEU F:114 P:138 121.0 0.712 -92.2 160.4 NA NA NA
6k0y 3 Q15116 99.3 2e-100 X-RAY
 2019-12-11 LEU C:114 C:138 158.0 0.929 -61.6 154.8 158.0 0.929 0.0 HOH
 2.853
 N
 O
6xkr 3 Q15116 100.0 2e-91 X-RAY
 2020-09-09 LEU C:107 P:138 148.0 0.871 -82.0 170.2 148.0 0.871 0.0 HOH
 3.005
 N
 O
3rrq 1 Q15116 99.22 5e-90 X-RAY
 2012-05-16 LEU A:107 A:138 156.0 0.918 -63.3 157.0 156.0 0.918 0.0 HOH
 3.005
 N
 O
5b8c 3 Q15116 99.22 8e-90 X-RAY
 2016-10-26 LEU C:109 C:138 152.0 0.894 -74.0 161.0 152.0 0.894 0.0 HOH
 2.875
 N
 O
LEU F:109 F:138 150.0 0.882 -73.3 159.9 NA NA NA
LEU I:109 I:138 141.0 0.829 -74.5 160.6 NA NA NA
LEU L:109 L:138 149.0 0.876 -73.8 159.8 NA NA NA
7vux 1 Q15116 99.22 8e-90 X-RAY
 2021-11-17 LEU A:108 A:138 150.0 0.882 -62.0 153.6 150.0 0.882 0.0 HOH
 3.116
 O
 O
5ggr 3 Q15116 99.2 7e-87 X-RAY
 2016-11-09 LEU E:113 Y:138 149.0 0.876 -91.3 117.7 149.0 0.876 0.0
LEU F:113 Z:138 139.0 0.818 -94.0 140.1 NA NA NA
5ggs 3 Q15116 99.19 3e-85 X-RAY
 2016-11-09 LEU E:113 Y:138 151.0 0.888 -68.1 148.8 NA NA NA
LEU F:113 Z:138 155.0 0.912 -64.0 155.6 155.0 0.912 0.0 HOH
 3.892
 N
 O
7bxa 1 Q15116 98.37 8e-85 X-RAY
 2020-06-10 LEU A:110 A:138 138.0 0.812 -67.3 144.6 138.0 0.812 0.0
LEU D:110 P:138 141.0 0.829 -69.3 167.2 NA NA NA
7cu5 2 Q15116 100.0 1e-82 X-RAY
 2020-10-14 LEU B:109 E:138 132.0 0.776 -83.9 135.5 NA NA NA
LEU D:109 Q:138 148.0 0.871 -70.0 131.3 148.0 0.871 0.0
4zqk 2 Q15116 99.15 2e-81 X-RAY
 2015-11-04 LEU B:106 B:138 155.0 0.912 -59.0 156.3 155.0 0.912 0.0
6hig 3 Q15116 99.15 2e-81 X-RAY
 2019-06-05 LEU C:106 B:138 145.0 0.853 -73.5 162.7 10.0 0.059 0.794 B:None:0.412
A:None:0.518
 HOH
 3.031
 N
 O
6j15 1 Q15116 100.0 2e-81 X-RAY
 2019-11-06 LEU A:111 C:138 151.0 0.888 -67.4 153.0 151.0 0.888 0.0
LEU B:111 D:138 137.0 0.806 -61.3 152.2 NA NA NA
7e9b 3 Q15116 100.0 1e-80 X-RAY
 2021-07-28 LEU C:107 C:138 149.0 0.876 -62.2 156.9 149.0 0.876 0.0 HOH
 2.908
 N
 O
2m2d 1 Q15116 99.15 1e-80 NMR
 2013-02-27 LEU A:106 A:138 96.0 0.565 E -69.7 159.9 96.0 0.565 0.0
6j14 3 Q15116 100.0 2e-80 X-RAY
 2019-11-06 LEU C:106 G:138 150.0 0.882 -63.7 160.8 150.0 0.882 0.0 HOH
 2.562
 N
 O
6umv 1 Q15116 94.35 7e-80 X-RAY
 2019-11-27 LEU A:107 A:138 152.0 0.894 -67.3 161.1 152.0 0.894 0.0 CL
HOH
 3.255
3.471
 N
O
 CL
O
6umu 1 Q15116 93.55 9e-79 X-RAY
 2019-11-27 LEU A:107 A:138 152.0 0.894 -71.7 163.8 152.0 0.894 0.0 CL
HOH
 3.243
3.486
 N
O
 CL
O
5jxe 1 Q15116 99.12 2e-78 X-RAY
 2016-08-10 LEU A:106 A:138 137.0 0.806 -70.2 112.9 137.0 0.806 0.0
LEU B:106 B:138 127.0 0.747 -82.5 133.9 NA NA NA
5ius 1 Q15116 90.32 2e-76 X-RAY
 2016-09-28 LEU A:117 A:138 152.0 0.894 -72.2 163.8 152.0 0.894 0.0
LEU B:117 B:138 148.0 0.871 -75.8 163.5 NA NA NA
6umt 1 Q15116 94.07 2e-75 X-RAY
 2019-11-27 LEU A:125 A:138 157.0 0.924 -59.7 152.1 157.0 0.924 0.0 HOH
 3.020
 N
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q15116-f1 1 Q15116 100.0 0.0 LEU A:138 A:138 149.0 0.876 -59.6 153.8