Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 128610553 . T A CCDS2151.1:NM_004805.3:c.200tAc>tTc_NP_004796.1:p.67Y>F Homo sapiens RNA polymerase II subunit D (POLR2D), mRNA.
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2c35 1 O15514 100.0 3e-102 X-RAY
 2005-11-18 TYR A:77 A:67 126.0 0.548 H -61.1 -48.2 14.0 0.061 0.487 B:P62487:0.487
 HOH
 7.650
 CE2
 O
TYR C:77 C:67 128.0 0.557 H -62.6 -47.9 NA NA NA
TYR E:77 E:67 128.0 0.557 H -56.2 -53.0 NA NA NA
TYR G:77 G:67 129.0 0.561 H -58.5 -53.0 NA NA NA
5iy6 4 O15514 100.0 5e-102 EM
 2016-05-18 TYR D:67 D:67 116.0 0.504 H -57.7 -50.3 30.0 0.13 0.374 G:P62487:0.374
5iy7 4 O15514 100.0 5e-102 EM
 2016-05-18 TYR D:67 D:67 130.0 0.565 H -57.5 -50.5 28.0 0.122 0.443 G:P62487:0.443
5iy8 4 O15514 100.0 5e-102 EM
 2016-05-18 TYR D:67 D:67 123.0 0.535 H -56.9 -51.1 28.0 0.122 0.413 G:P62487:0.413
5iy9 4 O15514 100.0 5e-102 EM
 2016-05-18 TYR D:67 D:67 137.0 0.596 H -58.1 -48.0 29.0 0.126 0.47 G:P62487:0.47
5iya 4 O15514 100.0 5e-102 EM
 2016-05-18 TYR D:67 D:67 116.0 0.504 H -57.7 -50.4 30.0 0.13 0.374 G:P62487:0.374
5iyb 4 O15514 100.0 5e-102 EM
 2016-05-18 TYR D:67 D:67 128.0 0.557 H -57.5 -50.5 25.0 0.109 0.448 G:P62487:0.448
5iyc 4 O15514 100.0 5e-102 EM
 2016-05-18 TYR D:67 D:67 127.0 0.552 H -56.9 -51.1 28.0 0.122 0.43 G:P62487:0.43
5iyd 4 O15514 100.0 5e-102 EM
 2016-05-18 TYR D:67 D:67 139.0 0.604 H -58.1 -47.9 30.0 0.13 0.474 G:P62487:0.474
6drd 4 O15514 100.0 5e-102 EM
 2019-06-12 TYR D:67 D:67 131.0 0.57 H -77.7 -31.6 24.0 0.104 0.466 G:P62487:0.465
6exv 4 A0A287ADR4 100.0 5e-102 EM
 2018-03-21 TYR D:67 D:67 187.0 0.813 H -73.4 -50.0 67.0 0.291 0.522 G:I3LJZ9:0.522
6gmh 4 A0A287ADR4 100.0 5e-102 EM
 2018-08-22 TYR D:67 D:67 137.0 0.596 H -66.0 -46.5 16.0 0.07 0.526 G:I3LJZ9:0.526
6gml 20 A0A287ADR4 100.0 5e-102 EM
 2018-09-05 TYR T:67 D:67 151.0 0.657 H -65.5 -48.3 20.0 0.087 0.57 U:I3LJZ9:0.57
6o9l 4 O15514 100.0 5e-102 EM
 2019-05-29 TYR D:67 D:67 128.0 0.557 H -72.5 -33.0 32.0 0.139 0.418 G:P62487:0.417
6ted 4 A0A287ADR4 100.0 5e-102 EM
 2020-07-22 TYR D:67 D:67 128.0 0.557 H -66.6 -53.5 16.0 0.07 0.487 G:I3LJZ9:0.487
6xre 4 O15514 100.0 5e-102 EM
 2021-03-24 TYR D:67 D:67 137.0 0.596 H -65.5 -34.8 24.0 0.104 0.492 G:P62487:0.491
7b0y 4 A0A287ADR4 100.0 5e-102 EM
 2021-01-13 TYR D:67 D:67 144.0 0.626 H -69.9 -56.1 20.0 0.087 0.539 G:I3LJZ9:0.539
7edx 25 A0A481BYI6 100.0 5e-102 EM
 2021-05-05 TYR EA:67 r:67 141.0 0.613 H -76.7 -59.8 56.0 0.243 0.37 MA:A0A4X1VKG7:0.37
7eg7 25 A0A481BYI6 100.0 5e-102 EM
 2021-05-05 TYR EA:67 r:67 140.0 0.609 H -76.6 -59.7 57.0 0.248 0.361 MA:A0A4X1VKG7:0.361
7eg8 25 A0A481BYI6 100.0 5e-102 EM
 2021-05-05 TYR EA:67 r:67 143.0 0.622 H -76.6 -59.7 18.0 0.078 0.544 HA:A0A4X1VKG7:0.543
7eg9 27 A0A481BYI6 100.0 5e-102 EM
 2021-05-05 TYR GA:67 r:67 141.0 0.613 H -76.8 -59.6 41.0 0.178 0.435 OA:A0A4X1VKG7:0.435
7ega 25 A0A481BYI6 100.0 5e-102 EM
 2021-05-05 TYR EA:67 r:67 141.0 0.613 H -76.7 -59.7 30.0 0.13 0.483 OA:A0A4X1VKG7:0.483
7egb 37 A0A481BYI6 100.0 5e-102 EM
 2021-05-05 TYR QA:67 r:67 140.0 0.609 H -76.6 -59.7 33.0 0.143 0.466 TA:A0A4X1VKG7:0.465
7egc 37 A0A481BYI6 100.0 5e-102 EM
 2021-05-12 TYR QA:67 r:67 138.0 0.6 H -76.7 -59.7 30.0 0.13 0.47 TA:A0A4X1VKG7:0.47
7ena 13 A0A481BYI6 100.0 5e-102 EM
 2021-05-26 TYR M:67 PD:67 107.0 0.465 H -66.6 -41.5 8.0 0.035 0.43 P:A0A4X1VKG7:0.43
7enc 58 A0A481BYI6 100.0 5e-102 EM
 2021-05-26 TYR LB:67 PD:67 108.0 0.47 H -65.1 -41.4 9.0 0.039 0.431 OB:A0A4X1VKG7:0.43
7f4g 12 A0A481BYI6 100.0 5e-102 EM
 2021-07-07 TYR L:67 D:67 113.0 0.491 H -61.7 -42.6 7.0 0.03 0.461 M:A0A4X1VKG7:0.461
7lbm 8 O15514 100.0 5e-102 EM
 2021-03-24 TYR H:67 D:67 139.0 0.604 H -64.3 -51.0 17.0 0.074 0.53 K:P62487:0.53
7nvr 14 A0A287ADR4 100.0 5e-102 EM
 2021-05-05 TYR N:67 D:67 129.0 0.561 H -65.1 -47.7 13.0 0.057 0.504 Q:I3LJZ9:0.504
7nvs 4 A0A287ADR4 100.0 5e-102 EM
 2021-05-05 TYR D:67 D:67 114.0 0.496 H -63.1 -48.9 25.0 0.109 0.387 G:I3LJZ9:0.387
7nvt 4 A0A287ADR4 100.0 5e-102 EM
 2021-05-05 TYR D:67 D:67 115.0 0.5 H -63.1 -49.1 24.0 0.104 0.396 G:I3LJZ9:0.396
7nvu 4 A0A287ADR4 100.0 5e-102 EM
 2021-05-05 TYR D:67 D:67 117.0 0.509 H -62.0 -47.7 38.0 0.165 0.344 G:I3LJZ9:0.343
7nvy 12 A0A287ADR4 100.0 5e-102 EM
 2021-05-05 TYR L:67 D:67 115.0 0.5 H -61.6 -48.4 23.0 0.1 0.4 O:I3LJZ9:0.4
7nvz 12 A0A287ADR4 100.0 5e-102 EM
 2021-05-05 TYR L:67 D:67 115.0 0.5 H -61.8 -48.6 24.0 0.104 0.396 O:I3LJZ9:0.396
7nw0 12 A0A287ADR4 100.0 5e-102 EM
 2021-05-05 TYR L:67 D:67 111.0 0.483 H -62.8 -47.1 31.0 0.135 0.348 O:I3LJZ9:0.348
7oo3 4 A0A287ADR4 100.0 5e-102 EM
 2021-10-06 TYR D:67 D:67 147.0 0.639 H -64.5 -51.0 26.0 0.113 0.526 G:I3LJZ9:0.526
7oob 4 A0A287ADR4 100.0 5e-102 EM
 2021-10-13 TYR D:67 D:67 147.0 0.639 H -64.5 -50.8 26.0 0.113 0.526 G:I3LJZ9:0.526
7oop 4 A0A287ADR4 100.0 5e-102 EM
 2021-10-06 TYR D:67 D:67 121.0 0.526 H -62.6 -53.0 10.0 0.043 0.483 G:I3LJZ9:0.483
7opc 4 A0A287ADR4 100.0 5e-102 EM
 2021-10-13 TYR D:67 D:67 127.0 0.552 H -63.3 -53.8 14.0 0.061 0.491 G:I3LJZ9:0.491
7opd 4 A0A287ADR4 100.0 5e-102 EM
 2021-10-06 TYR D:67 D:67 127.0 0.552 H -63.3 -53.8 14.0 0.061 0.491 G:I3LJZ9:0.491
7ozn 4 A0A287ADR4 100.0 5e-102 EM
 2021-10-06 TYR D:67 D:67 123.0 0.535 H -61.4 -45.5 14.0 0.061 0.474 G:I3LJZ9:0.474
TYR P:67 P:67 130.0 0.565 H -61.4 -45.4 15.0 0.065 0.5 S:I3LJZ9:0.5
7ozo 4 A0A287ADR4 100.0 5e-102 EM
 2021-10-06 TYR D:67 D:67 121.0 0.526 H -61.4 -45.5 12.0 0.052 0.474 G:I3LJZ9:0.474
TYR P:67 P:67 127.0 0.552 H -61.4 -45.5 13.0 0.057 0.495 S:I3LJZ9:0.496
7ozp 4 A0A287ADR4 100.0 5e-102 EM
 2021-10-06 TYR D:67 D:67 123.0 0.535 H -61.4 -45.7 14.0 0.061 0.474 G:I3LJZ9:0.474
TYR P:67 P:67 123.0 0.535 H -61.4 -45.7 15.0 0.065 0.47 S:I3LJZ9:0.47
7pks 4 A0A287ADR4 100.0 5e-102 EM
 2021-12-08 TYR D:67 D:67 134.0 0.583 H -64.1 -37.3 41.0 0.178 0.405 G:I3LJZ9:0.404
5flm 4 Q1JQ91 99.3 2e-101 EM
 2016-01-20 TYR D:67 D:67 131.0 0.57 H -64.9 -49.4 17.0 0.074 0.496 G:Q5E9B8:0.496
5oik 4 Q1JQ91 99.3 2e-101 EM
 2017-09-13 TYR D:67 D:67 133.0 0.578 H -60.7 -48.6 15.0 0.065 0.513 G:Q5E9B8:0.513
7okx 4 A0A287ADR4 100.0 2e-101 EM
 2021-07-14 TYR D:109 D:109 122.0 0.53 H -64.7 -50.1 10.0 0.043 0.487 G:I3LJZ9:0.487
7oky 4 A0A287ADR4 100.0 2e-101 EM
 2021-07-14 TYR D:109 D:109 123.0 0.535 H -64.7 -50.1 10.0 0.043 0.492 G:I3LJZ9:0.491
7ol0 4 A0A287ADR4 100.0 2e-101 EM
 2021-07-14 TYR D:109 D:109 152.0 0.661 H -77.5 -7.9 28.0 0.122 0.539 G:I3LJZ9:0.539

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o15514-f1 1 O15514 100.0 2e-102 TYR A:67 A:67 123.0 0.535 H -61.9 -51.3