Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 128615627 . G A CCDS2151.1:NM_004805.3:c.48gaC>gaT_NP_004796.1:p.16D>D Homo sapiens RNA polymerase II subunit D (POLR2D), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2c35 1 O15514 100.0 3e-102 X-RAY
 2005-11-18 ASP A:26 A:16 54.0 0.36 B -169.0 108.9 27.0 0.18 0.18 B:P62487:0.18
 HOH
 7.670
 C
 O
ASP C:26 C:16 55.0 0.367 B -168.3 109.3 NA NA NA
ASP E:26 E:16 55.0 0.367 B -149.0 105.6 NA NA NA
ASP G:26 G:16 53.0 0.353 B -149.2 105.7 NA NA NA
5iy6 4 O15514 100.0 5e-102 EM
 2016-05-18 ASP D:16 D:16 59.0 0.393 B -155.3 114.6 22.0 0.147 0.246 G:P62487:0.247
5iy7 4 O15514 100.0 5e-102 EM
 2016-05-18 ASP D:16 D:16 59.0 0.393 B -157.0 107.5 29.0 0.193 0.2 G:P62487:0.2
5iy8 4 O15514 100.0 5e-102 EM
 2016-05-18 ASP D:16 D:16 55.0 0.367 B -160.0 109.9 29.0 0.193 0.174 G:P62487:0.173
5iy9 4 O15514 100.0 5e-102 EM
 2016-05-18 ASP D:16 D:16 56.0 0.373 B -152.2 108.2 33.0 0.22 0.153 G:P62487:0.153
5iya 4 O15514 100.0 5e-102 EM
 2016-05-18 ASP D:16 D:16 58.0 0.387 B -155.2 114.7 22.0 0.147 0.24 G:P62487:0.24
5iyb 4 O15514 100.0 5e-102 EM
 2016-05-18 ASP D:16 D:16 59.0 0.393 B -157.0 107.5 30.0 0.2 0.193 G:P62487:0.193
5iyc 4 O15514 100.0 5e-102 EM
 2016-05-18 ASP D:16 D:16 55.0 0.367 B -160.0 110.0 29.0 0.193 0.174 G:P62487:0.173
5iyd 4 O15514 100.0 5e-102 EM
 2016-05-18 ASP D:16 D:16 55.0 0.367 B -152.1 108.2 32.0 0.213 0.154 G:P62487:0.153
6drd 4 O15514 100.0 5e-102 EM
 2019-06-12 ASP D:16 D:16 74.0 0.493 -161.3 142.5 25.0 0.167 0.326 G:P62487:0.327
6exv 4 A0A287ADR4 100.0 5e-102 EM
 2018-03-21 ASP D:16 D:16 81.0 0.54 -114.7 129.1 28.0 0.187 0.353 G:I3LJZ9:0.353
6gmh 4 A0A287ADR4 100.0 5e-102 EM
 2018-08-22 ASP D:16 D:16 72.0 0.48 -135.5 133.6 34.0 0.227 0.253 G:I3LJZ9:0.193
W:O00267:0.087
6gml 20 A0A287ADR4 100.0 5e-102 EM
 2018-09-05 ASP T:16 D:16 63.0 0.42 B -161.3 111.8 36.0 0.24 0.18 S:O00267:0.04
U:I3LJZ9:0.16
6o9l 4 O15514 100.0 5e-102 EM
 2019-05-29 ASP D:16 D:16 61.0 0.407 B -146.3 126.4 17.0 0.113 0.294 G:P62487:0.293
6ted 4 A0A287ADR4 100.0 5e-102 EM
 2020-07-22 ASP D:16 D:16 67.0 0.447 -134.0 118.0 39.0 0.26 0.187 G:I3LJZ9:0.187
6xre 4 O15514 100.0 5e-102 EM
 2021-03-24 ASP D:16 D:16 67.0 0.447 B -142.5 95.1 52.0 0.347 0.1 G:P62487:0.1
7b0y 4 A0A287ADR4 100.0 5e-102 EM
 2021-01-13 ASP D:16 D:16 66.0 0.44 B -141.8 126.2 36.0 0.24 0.2 G:I3LJZ9:0.2
7edx 25 A0A481BYI6 100.0 5e-102 EM
 2021-05-05 ASP EA:16 r:16 67.0 0.447 -130.1 133.7 28.0 0.187 0.26 MA:A0A4X1VKG7:0.26
7eg7 25 A0A481BYI6 100.0 5e-102 EM
 2021-05-05 ASP EA:16 r:16 67.0 0.447 -130.1 133.7 29.0 0.193 0.254 MA:A0A4X1VKG7:0.253
7eg8 25 A0A481BYI6 100.0 5e-102 EM
 2021-05-05 ASP EA:16 r:16 67.0 0.447 -130.2 133.7 20.0 0.133 0.314 HA:A0A4X1VKG7:0.313
7eg9 27 A0A481BYI6 100.0 5e-102 EM
 2021-05-05 ASP GA:16 r:16 67.0 0.447 -130.2 133.7 20.0 0.133 0.314 OA:A0A4X1VKG7:0.313
7ega 25 A0A481BYI6 100.0 5e-102 EM
 2021-05-05 ASP EA:16 r:16 67.0 0.447 -130.2 133.6 17.0 0.113 0.334 OA:A0A4X1VKG7:0.333
7egb 37 A0A481BYI6 100.0 5e-102 EM
 2021-05-05 ASP QA:16 r:16 67.0 0.447 -130.1 133.8 11.0 0.073 0.374 TA:A0A4X1VKG7:0.373
7egc 37 A0A481BYI6 100.0 5e-102 EM
 2021-05-12 ASP QA:16 r:16 68.0 0.453 -130.2 133.7 17.0 0.113 0.34 TA:A0A4X1VKG7:0.34
7ena 13 A0A481BYI6 100.0 5e-102 EM
 2021-05-26 ASP M:16 PD:16 54.0 0.36 -140.3 148.6 17.0 0.113 0.247 P:A0A4X1VKG7:0.247
7enc 58 A0A481BYI6 100.0 5e-102 EM
 2021-05-26 ASP LB:16 PD:16 65.0 0.433 -144.4 152.5 14.0 0.093 0.34 OB:A0A4X1VKG7:0.34
7f4g 12 A0A481BYI6 100.0 5e-102 EM
 2021-07-07 ASP L:16 D:16 85.0 0.567 B -162.7 130.6 41.0 0.273 0.294 M:A0A4X1VKG7:0.293
7lbm 8 O15514 100.0 5e-102 EM
 2021-03-24 ASP H:16 D:16 67.0 0.447 B -137.6 107.2 48.0 0.32 0.127 K:P62487:0.127
7nvr 14 A0A287ADR4 100.0 5e-102 EM
 2021-05-05 ASP N:16 D:16 46.0 0.307 B -131.4 123.9 8.0 0.053 0.254 Q:I3LJZ9:0.253
7nvs 4 A0A287ADR4 100.0 5e-102 EM
 2021-05-05 ASP D:16 D:16 54.0 0.36 B -136.3 127.1 11.0 0.073 0.287 G:I3LJZ9:0.287
7nvt 4 A0A287ADR4 100.0 5e-102 EM
 2021-05-05 ASP D:16 D:16 54.0 0.36 B -134.3 126.4 12.0 0.08 0.28 G:I3LJZ9:0.28
7nvu 4 A0A287ADR4 100.0 5e-102 EM
 2021-05-05 ASP D:16 D:16 72.0 0.48 B -137.5 130.6 23.0 0.153 0.327 G:I3LJZ9:0.327
7nvy 12 A0A287ADR4 100.0 5e-102 EM
 2021-05-05 ASP L:16 D:16 54.0 0.36 B -136.4 127.2 11.0 0.073 0.287 O:I3LJZ9:0.287
7nvz 12 A0A287ADR4 100.0 5e-102 EM
 2021-05-05 ASP L:16 D:16 55.0 0.367 B -134.3 126.6 13.0 0.087 0.28 O:I3LJZ9:0.28
7nw0 12 A0A287ADR4 100.0 5e-102 EM
 2021-05-05 ASP L:16 D:16 70.0 0.467 B -137.1 130.1 23.0 0.153 0.314 O:I3LJZ9:0.313
7oo3 4 A0A287ADR4 100.0 5e-102 EM
 2021-10-06 ASP D:16 D:16 69.0 0.46 B -142.0 126.8 41.0 0.273 0.187 G:I3LJZ9:0.187
7oob 4 A0A287ADR4 100.0 5e-102 EM
 2021-10-13 ASP D:16 D:16 69.0 0.46 B -141.9 126.8 41.0 0.273 0.187 G:I3LJZ9:0.187
7oop 4 A0A287ADR4 100.0 5e-102 EM
 2021-10-06 ASP D:16 D:16 72.0 0.48 B -142.6 125.1 51.0 0.34 0.14 G:I3LJZ9:0.14
7opc 4 A0A287ADR4 100.0 5e-102 EM
 2021-10-13 ASP D:16 D:16 60.0 0.4 B -146.4 110.8 28.0 0.187 0.213 G:I3LJZ9:0.213
7opd 4 A0A287ADR4 100.0 5e-102 EM
 2021-10-06 ASP D:16 D:16 60.0 0.4 B -146.4 110.8 28.0 0.187 0.213 G:I3LJZ9:0.213
7ozn 4 A0A287ADR4 100.0 5e-102 EM
 2021-10-06 ASP D:16 D:16 62.0 0.413 B -146.6 129.2 29.0 0.193 0.22 G:I3LJZ9:0.22
ASP P:16 P:16 58.0 0.387 B -146.6 129.2 26.0 0.173 0.214 S:I3LJZ9:0.213
7ozo 4 A0A287ADR4 100.0 5e-102 EM
 2021-10-06 ASP D:16 D:16 59.0 0.393 B -148.8 129.1 27.0 0.18 0.213 G:I3LJZ9:0.213
ASP P:16 P:16 58.0 0.387 B -148.8 129.1 25.0 0.167 0.22 S:I3LJZ9:0.22
7ozp 4 A0A287ADR4 100.0 5e-102 EM
 2021-10-06 ASP D:16 D:16 60.0 0.4 B -148.4 128.9 29.0 0.193 0.207 G:I3LJZ9:0.207
ASP P:16 P:16 59.0 0.393 B -148.4 128.9 28.0 0.187 0.206 S:I3LJZ9:0.207
7pks 4 A0A287ADR4 100.0 5e-102 EM
 2021-12-08 ASP D:16 D:16 79.0 0.527 B -157.7 159.7 40.0 0.267 0.26 G:I3LJZ9:0.26
5flm 4 Q1JQ91 99.3 2e-101 EM
 2016-01-20 ASP D:16 D:16 58.0 0.387 B -142.2 131.9 22.0 0.147 0.24 G:Q5E9B8:0.24
5oik 4 Q1JQ91 99.3 2e-101 EM
 2017-09-13 ASP D:16 D:16 64.0 0.427 B -166.0 112.1 21.0 0.14 0.287 G:Q5E9B8:0.267
Q:O00267:0.02
7okx 4 A0A287ADR4 100.0 2e-101 EM
 2021-07-14 ASP D:58 NA:NA DO NA DO DO DO NA NA NA
7oky 4 A0A287ADR4 100.0 2e-101 EM
 2021-07-14 ASP D:58 NA:NA DO NA DO DO DO NA NA NA
7ol0 4 A0A287ADR4 100.0 2e-101 EM
 2021-07-14 ASP D:58 NA:NA DO NA DO DO DO NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o15514-f1 1 O15514 100.0 2e-102 ASP A:16 A:16 64.0 0.427 B -147.2 106.6