Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 130737749 . G A CCDS46408.1:NM_032144.2:c.61Gag>Aag_NP_115520.2:p.21E>K Homo sapiens RAB6C, member RAS oncogene family (RAB6C), mRNA.
pdb_id: 
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label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4dkx 1 P20340 90.87 4e-136 X-RAY
 2012-10-17 GLU A:21 A:21 30.0 0.158 S -61.0 162.2 30.0 0.158 0.0 GDP
MG
HOH
 4.156
7.480
2.772
 O
O
OE1
 O3B
MG
O
GLU B:21 B:21 40.0 0.211 S -75.0 164.9 NA NA NA
3bbp 1 P20340 89.32 3e-132 X-RAY
 2008-02-05 GLU A:24 A:21 32.0 0.168 S -62.7 179.5 32.0 0.168 0.0 MG
GTP
 6.747
3.627
 O
O
 MG
O1B
GLU B:24 B:21 31.0 0.163 S -62.8 178.7 31.0 0.163 0.0 MG
GTP
 6.526
3.606
 O
O
 MG
O1B
GLU C:24 C:21 31.0 0.163 S -62.3 179.5 NA NA NA
5lef 1 P20340 88.48 3e-120 X-RAY
 2017-11-15 GLU A:17 A:21 27.0 0.142 S -66.7 170.2 27.0 0.142 0.0 GTP
MG
HOH
 4.017
7.400
2.050
 O
O
H
 O3G
MG
O
GLU B:17 B:21 32.0 0.168 S -63.0 170.0 32.0 0.168 0.0 GTP
MG
HOH
 3.817
7.377
2.117
 O
O
H
 O1G
MG
O
3cwz 1 P20340 89.36 1e-119 X-RAY
 2008-11-18 GLU A:14 A:21 23.0 0.121 S -76.8 164.3 23.0 0.121 0.0 MG
GTP
HOH
 7.368
4.206
7.096
 O
O
OE2
 MG
O3B
O
1yzq 1 P20340 91.18 5e-110 X-RAY
 2005-07-26 GLU A:14 A:21 39.0 0.205 S -62.0 155.5 39.0 0.205 0.0 MG
GNP
HOH
 7.451
4.012
2.553
 O
O
OE1
 MG
O1B
O
2y8e 1 O18334 86.36 1e-109 X-RAY
 2011-07-06 GLU A:22 A:20 40.0 0.211 S -58.9 160.8 40.0 0.211 0.0 GNP
MG
HOH
 3.966
7.355
2.674
 O
O
OE1
 O2B
MG
O
GLU B:22 B:20 28.0 0.147 S -60.4 161.0 NA NA NA
2gil 1 P20340 89.51 3e-102 X-RAY
 2006-06-27 GLU A:9 A:21 17.0 0.089 S -64.0 153.5 17.0 0.089 0.0 MG
GTP
HOH
 7.317
3.936
2.940
 O
O
OE2
 MG
O1B
O
GLU B:9 B:21 25.0 0.132 S -65.6 161.8 NA NA NA
GLU C:9 C:21 17.0 0.089 S -64.2 158.5 NA NA NA
GLU D:9 D:21 33.0 0.174 S -62.8 165.7 NA NA NA
2e9s 1 Q9NRW1 83.95 4e-97 X-RAY
 2008-01-29 GLU A:10 A:21 31.0 0.163 S -62.6 161.1 31.0 0.163 0.0 NO3
MG
GDP
HOH
 4.600
7.218
3.937
2.590
 O
O
O
OE1
 O2
MG
O2B
O
GLU B:10 B:21 43.0 0.226 S -61.6 158.9 NA NA NA
GLU C:10 C:21 37.0 0.195 S -58.0 156.0 NA NA NA
2fe4 1 Q9NRW1 83.95 4e-97 X-RAY
 2006-07-04 GLU A:10 A:21 25.0 0.132 S -64.7 156.0 25.0 0.132 0.0 MG
NO3
GDP
HOH
 7.362
4.582
3.788
2.506
 O
O
O
OE1
 MG
O2
O2B
O
2ffq 1 Q9NRW1 83.95 4e-97 X-RAY
 2006-07-04 GLU A:10 A:21 31.0 0.163 S -60.6 171.2 31.0 0.163 0.0 MG
GSP
HOH
 7.539
3.947
2.727
 O
O
OE1
 MG
O1B
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9h0n0-f1 1 Q9H0N0 100.0 0.0 GLU A:21 A:21 36.0 0.189 S -60.6 166.9
af-q53s08-f1 1 Q53S08 98.82 0.0 GLU A:21 A:21 33.0 0.174 -61.8 168.8
af-p20340-f1 1 P20340 89.9 2e-136 GLU A:21 A:21 29.0 0.153 S -60.4 167.2
af-q9nrw1-f1 1 Q9NRW1 82.21 2e-126 GLU A:21 A:21 29.0 0.153 S -60.8 166.8