Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 130737813 . A C CCDS46408.1:NM_032144.2:c.125tAt>tCt_NP_115520.2:p.42Y>S Homo sapiens RAB6C, member RAS oncogene family (RAB6C), mRNA.
pdb_id: 
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label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4dkx 1 P20340 90.87 4e-136 X-RAY
 2012-10-17 TYR A:42 NA:NA DO NA DO DO DO NA NA NA
TYR B:42 NA:NA DO NA DO DO DO NA NA NA
3bbp 1 P20340 89.32 3e-132 X-RAY
 2008-02-05 TYR A:45 A:42 120.0 0.522 -84.5 129.5 120.0 0.522 0.0 MG
GTP
 7.012
2.540
 CE1
OH
 MG
O2G
TYR B:45 B:42 119.0 0.517 -84.6 129.3 119.0 0.517 0.0 MG
GTP
 7.061
2.506
 CE1
OH
 MG
O2G
TYR C:45 C:42 120.0 0.522 -84.4 129.4 NA NA NA
5lef 1 P20340 88.48 3e-120 X-RAY
 2017-11-15 TYR A:38 A:42 115.0 0.5 -79.4 122.3 115.0 0.5 0.0 GTP
MG
HOH
 1.781
4.895
1.856
 HH
HE1
H
 O2G
MG
O
TYR B:38 B:42 120.0 0.522 -83.2 121.8 120.0 0.522 0.0 GTP
MG
IPA
HOH
 1.759
4.812
2.348
2.112
 HH
HE1
HD1
H
 O2G
MG
HO2
O
3cwz 1 P20340 89.36 1e-119 X-RAY
 2008-11-18 TYR A:35 A:42 112.0 0.487 -78.2 126.1 112.0 0.487 0.0 MG
GTP
HOH
 7.432
3.169
8.369
 CE1
OH
N
 MG
O2G
O
1yzq 1 P20340 91.18 5e-110 X-RAY
 2005-07-26 TYR A:35 A:42 122.0 0.53 -75.9 117.8 122.0 0.53 0.0 MG
GNP
HOH
 5.589
2.517
3.029
 CE1
OH
N
 MG
O1G
O
2y8e 1 O18334 86.36 1e-109 X-RAY
 2011-07-06 TYR A:43 A:41 124.0 0.539 -81.1 119.4 124.0 0.539 0.0 GNP
MG
HOH
 2.506
5.665
2.692
 OH
CE1
O
 O2G
MG
O
TYR B:43 B:41 118.0 0.513 -84.4 118.0 NA NA NA
2gil 1 P20340 89.51 3e-102 X-RAY
 2006-06-27 TYR A:30 A:42 137.0 0.596 -80.6 115.6 137.0 0.596 0.0 MG
GTP
HOH
 5.708
2.605
2.957
 CE1
OH
O
 MG
O1G
O
TYR B:30 B:42 120.0 0.522 -67.2 116.9 NA NA NA
TYR C:30 C:42 125.0 0.543 -77.2 118.4 NA NA NA
TYR D:30 D:42 124.0 0.539 -73.7 118.7 NA NA NA
2e9s 1 Q9NRW1 83.95 4e-97 X-RAY
 2008-01-29 TYR A:31 A:42 136.0 0.591 -82.0 133.5 136.0 0.591 0.0 NO3
MG
GDP
HOH
 2.836
5.585
3.362
2.582
 OH
CE1
CD1
O
 O1
MG
O1A
O
TYR B:31 NA:NA DO NA DO DO DO NA NA NA
TYR C:31 NA:NA DO NA DO DO DO NA NA NA
2fe4 1 Q9NRW1 83.95 4e-97 X-RAY
 2006-07-04 TYR A:31 A:42 221.0 0.961 -92.3 153.4 221.0 0.961 0.0 MG
NO3
GDP
HOH
 7.534
7.449
4.836
3.895
 C
CB
N
N
 MG
O1
O3'
O
2ffq 1 Q9NRW1 83.95 4e-97 X-RAY
 2006-07-04 TYR A:31 A:42 114.0 0.496 -84.9 127.6 114.0 0.496 0.0 MG
GSP
HOH
 5.974
3.029
3.489
 CE2
OH
CA
 MG
S1G
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9h0n0-f1 1 Q9H0N0 100.0 0.0 TYR A:42 A:42 123.0 0.535 -71.3 112.3
af-q53s08-f1 1 Q53S08 98.82 0.0 TYR A:42 A:42 129.0 0.561 -69.8 113.8
af-p20340-f1 1 P20340 89.9 2e-136 TYR A:42 A:42 135.0 0.587 -71.4 122.6
af-q9nrw1-f1 1 Q9NRW1 82.21 2e-126 TYR A:42 A:42 135.0 0.587 -71.1 122.7