Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 130737824 . A C CCDS46408.1:NM_032144.2:c.136Att>Ctt_NP_115520.2:p.46I>L Homo sapiens RAB6C, member RAS oncogene family (RAB6C), mRNA.
pdb_id: 
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label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4dkx 1 P20340 90.87 4e-136 X-RAY
 2012-10-17 ILE A:46 NA:NA DO NA DO DO DO NA NA NA
ILE B:46 NA:NA DO NA DO DO DO NA NA NA
3bbp 1 P20340 89.32 3e-132 X-RAY
 2008-02-05 ILE A:49 A:46 107.0 0.611 -106.9 128.9 3.0 0.017 0.594 D:Q8IWJ2:0.583
E:Q8IWJ2:0.091
 MG
GTP
 6.492
5.856
 N
N
 MG
O3G
ILE B:49 B:46 106.0 0.606 -107.3 129.6 3.0 0.017 0.589 E:Q8IWJ2:0.571
D:Q8IWJ2:0.114
 MG
GTP
 6.667
5.839
 N
N
 MG
O3G
ILE C:49 C:46 108.0 0.617 -106.6 129.3 NA NA NA
5lef 1 P20340 88.48 3e-120 X-RAY
 2017-11-15 ILE A:42 A:46 116.0 0.663 -100.4 103.7 23.0 0.131 0.532 D:P97329:0.474
C:P97329:0.12
 GTP
MG
HOH
 5.852
6.301
1.961
 N
N
H
 O1G
MG
O
ILE B:42 B:46 103.0 0.589 -104.2 127.4 19.0 0.109 0.48 D:P97329:0.263
C:P97329:0.326
 GTP
MG
IPA
HOH
 5.819
6.226
8.169
2.227
 N
N
H
H
 O3G
MG
H31
O
3cwz 1 P20340 89.36 1e-119 X-RAY
 2008-11-18 ILE A:39 A:46 112.0 0.64 -99.3 83.8 15.0 0.086 0.554 B:Q6PAL8:0.554
 MG
GTP
HOH
 6.675
5.891
3.284
 N
N
O
 MG
O3G
O
1yzq 1 P20340 91.18 5e-110 X-RAY
 2005-07-26 ILE A:39 A:46 108.0 0.617 -97.4 97.9 108.0 0.617 0.0 MG
GNP
HOH
 6.406
5.979
2.723
 N
N
O
 MG
O2G
O
2y8e 1 O18334 86.36 1e-109 X-RAY
 2011-07-06 ILE A:47 A:45 98.0 0.56 -109.3 118.8 98.0 0.56 0.0 GNP
MG
HOH
 5.827
6.379
4.339
 N
N
O
 O3G
MG
O
ILE B:47 B:45 124.0 0.709 -108.3 112.7 NA NA NA
2gil 1 P20340 89.51 3e-102 X-RAY
 2006-06-27 ILE A:34 A:46 109.0 0.623 -105.7 114.6 109.0 0.623 0.0 MG
GTP
HOH
 6.437
5.779
3.578
 N
N
CD1
 MG
O2G
O
ILE B:34 B:46 98.0 0.56 -105.4 113.3 NA NA NA
ILE C:34 C:46 133.0 0.76 -94.7 105.1 NA NA NA
ILE D:34 D:46 99.0 0.566 -104.7 113.1 NA NA NA
2e9s 1 Q9NRW1 83.95 4e-97 X-RAY
 2008-01-29 ILE A:35 A:46 115.0 0.657 -109.3 115.7 115.0 0.657 0.0 NO3
MG
GDP
HOH
 5.877
6.509
8.451
3.287
 N
N
N
N
 O3
MG
O3B
O
ILE B:35 NA:NA DO NA DO DO DO NA NA NA
ILE C:35 NA:NA DO NA DO DO DO NA NA NA
2fe4 1 Q9NRW1 83.95 4e-97 X-RAY
 2006-07-04 ILE A:35 A:46 64.0 0.366 -171.2 58.0 64.0 0.366 0.0 MG
NO3
GDP
HOH
 6.111
5.303
8.121
6.009
 N
N
N
N
 MG
O3
O3B
O
2ffq 1 Q9NRW1 83.95 4e-97 X-RAY
 2006-07-04 ILE A:35 A:46 113.0 0.646 -116.9 12.3 113.0 0.646 0.0 MG
GSP
HOH
 6.421
5.909
3.071
 N
N
N
 MG
O2G
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9h0n0-f1 1 Q9H0N0 100.0 0.0 ILE A:46 A:46 174.0 0.994 S -95.2 105.2
af-q53s08-f1 1 Q53S08 98.82 0.0 ILE A:46 A:46 173.0 0.989 S -93.4 107.8
af-p20340-f1 1 P20340 89.9 2e-136 ILE A:46 A:46 129.0 0.737 -106.4 124.5
af-q9nrw1-f1 1 Q9NRW1 82.21 2e-126 ILE A:46 A:46 132.0 0.754 -106.9 124.3