Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 130737870 . C A CCDS46408.1:NM_032144.2:c.182aCa>aAa_NP_115520.2:p.61T>K Homo sapiens RAB6C, member RAS oncogene family (RAB6C), mRNA.
pdb_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4dkx 1 P20340 90.87 4e-136 X-RAY
 2012-10-17 THR A:61 A:61 93.0 0.664 E -129.3 121.8 93.0 0.664 0.0 HOH
 8.468
 OG1
 O
THR B:61 B:61 77.0 0.55 E -121.6 126.4 NA NA NA
3bbp 1 P20340 89.32 3e-132 X-RAY
 2008-02-05 THR A:64 A:61 89.0 0.636 E -79.3 127.2 89.0 0.636 0.0
THR B:64 B:61 91.0 0.65 -104.9 139.8 91.0 0.65 0.0
THR C:64 C:61 92.0 0.657 E -78.5 148.9 NA NA NA
5lef 1 P20340 88.48 3e-120 X-RAY
 2017-11-15 THR A:57 A:61 48.0 0.343 E -109.0 139.9 48.0 0.343 0.0 HOH
 6.442
 HG23
 O
THR B:57 B:61 100.0 NA -76.9 95.4 100.0 NA NA HOH
 3.247
 HA
 O
3cwz 1 P20340 89.36 1e-119 X-RAY
 2008-11-18 THR A:54 A:61 66.0 0.471 -150.0 112.5 66.0 0.471 0.0 HOH
 6.149
 O
 O
1yzq 1 P20340 91.18 5e-110 X-RAY
 2005-07-26 THR A:54 A:61 88.0 0.629 E -119.6 127.5 88.0 0.629 0.0 HOH
 2.850
 OG1
 O
2y8e 1 O18334 86.36 1e-109 X-RAY
 2011-07-06 THR A:62 A:60 61.0 0.436 E -80.5 132.0 61.0 0.436 0.0 HOH
 7.279
 CA
 O
THR B:62 B:60 64.0 0.457 E -83.9 132.2 NA NA NA
2gil 1 P20340 89.51 3e-102 X-RAY
 2006-06-27 THR A:49 A:61 103.0 0.736 E -85.3 142.7 103.0 0.736 0.0 HOH
 3.444
 N
 O
THR B:49 B:61 120.0 0.857 E -59.6 142.0 NA NA NA
THR C:49 C:61 105.0 0.75 E -75.7 131.2 NA NA NA
THR D:49 D:61 98.0 0.7 E -86.1 154.1 NA NA NA
2e9s 1 Q9NRW1 83.95 4e-97 X-RAY
 2008-01-29 THR A:50 A:61 109.0 0.779 E -118.2 142.5 109.0 0.779 0.0 HOH
 2.829
 O
 O
THR B:50 B:61 91.0 0.65 E -114.8 147.4 NA NA NA
THR C:50 C:61 47.0 0.336 E -139.6 145.9 NA NA NA
2fe4 1 Q9NRW1 83.95 4e-97 X-RAY
 2006-07-04 THR A:50 A:61 76.0 0.543 E -120.8 144.4 76.0 0.543 0.0 HOH
 6.675
 CG2
 O
2ffq 1 Q9NRW1 83.95 4e-97 X-RAY
 2006-07-04 THR A:50 A:61 88.0 0.629 E -119.4 151.2 88.0 0.629 0.0 HOH
 7.056
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9h0n0-f1 1 Q9H0N0 100.0 0.0 THR A:61 A:61 51.0 0.364 E -107.2 124.5
af-q53s08-f1 1 Q53S08 98.82 0.0 THR A:61 A:61 50.0 0.357 E -109.3 124.9
af-p20340-f1 1 P20340 89.9 2e-136 THR A:61 A:61 49.0 0.35 E -104.2 127.4
af-q9nrw1-f1 1 Q9NRW1 82.21 2e-126 THR A:61 A:61 54.0 0.386 E -105.2 129.8