Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 130737890 . G A CCDS46408.1:NM_032144.2:c.202Gat>Aat_NP_115520.2:p.68D>N Homo sapiens RAB6C, member RAS oncogene family (RAB6C), mRNA.
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4dkx 1 P20340 90.87 4e-136 X-RAY
 2012-10-17 ASP A:68 A:68 56.0 0.373 -131.6 138.9 56.0 0.373 0.0 GDP
MG
HOH
 4.975
4.056
2.512
 OD1
OD2
OD1
 O2B
MG
O
ASP B:68 B:68 14.0 0.093 E -151.3 146.0 NA NA NA
3bbp 1 P20340 89.32 3e-132 X-RAY
 2008-02-05 ASP A:71 A:68 7.0 0.047 E -93.2 101.9 7.0 0.047 0.0 MG
GTP
 2.835
4.776
 OD1
OD1
 MG
O2B
ASP B:71 B:68 8.0 0.053 E -93.5 102.6 8.0 0.053 0.0 MG
GTP
 2.835
4.786
 OD1
OD1
 MG
O2B
ASP C:71 C:68 7.0 0.047 E -93.4 102.3 NA NA NA
5lef 1 P20340 88.48 3e-120 X-RAY
 2017-11-15 ASP A:64 A:68 2.0 0.013 E -96.1 99.5 2.0 0.013 0.0 GTP
MG
HOH
 4.721
3.841
2.451
 OD1
OD2
OD1
 O1B
MG
O
ASP B:64 B:68 4.0 0.027 E -99.8 111.7 4.0 0.027 0.0 GTP
MG
IPA
HOH
 4.874
3.983
6.283
2.626
 OD1
OD2
OD2
OD1
 O2B
MG
H31
O
3cwz 1 P20340 89.36 1e-119 X-RAY
 2008-11-18 ASP A:61 A:68 8.0 0.053 E -99.6 101.3 8.0 0.053 0.0 MG
GTP
HOH
 2.964
4.886
7.517
 OD1
OD2
CB
 MG
O2B
O
1yzq 1 P20340 91.18 5e-110 X-RAY
 2005-07-26 ASP A:61 A:68 10.0 0.067 E -86.9 102.4 10.0 0.067 0.0 MG
GNP
HOH
 4.027
4.849
2.700
 OD2
OD1
OD1
 MG
O2B
O
2y8e 1 O18334 86.36 1e-109 X-RAY
 2011-07-06 ASP A:69 A:67 11.0 0.073 E -110.6 104.2 11.0 0.073 0.0 GNP
MG
HOH
 4.863
4.155
2.613
 OD1
OD2
OD1
 O1B
MG
O
ASP B:69 B:67 15.0 0.1 E -107.0 104.6 NA NA NA
2gil 1 P20340 89.51 3e-102 X-RAY
 2006-06-27 ASP A:56 A:68 12.0 0.08 E -108.0 106.1 12.0 0.08 0.0 MG
GTP
HOH
 3.960
4.799
2.581
 OD2
OD1
OD1
 MG
O2B
O
ASP B:56 B:68 10.0 0.067 E -108.2 104.2 NA NA NA
ASP C:56 C:68 14.0 0.093 E -100.4 109.9 NA NA NA
ASP D:56 D:68 11.0 0.073 E -104.8 106.1 NA NA NA
2e9s 1 Q9NRW1 83.95 4e-97 X-RAY
 2008-01-29 ASP A:57 A:68 3.0 0.02 E -96.2 119.8 3.0 0.02 0.0 NO3
MG
GDP
HOH
 5.601
4.011
4.781
2.414
 OD2
OD1
OD2
OD2
 O3
MG
O3B
O
ASP B:57 B:68 41.0 0.273 -101.3 141.4 NA NA NA
ASP C:57 C:68 42.0 0.28 E -109.5 124.5 NA NA NA
2fe4 1 Q9NRW1 83.95 4e-97 X-RAY
 2006-07-04 ASP A:57 A:68 37.0 0.247 E -102.6 125.8 37.0 0.247 0.0 MG
NO3
GDP
HOH
 3.983
5.468
4.782
2.395
 OD1
OD2
OD2
OD2
 MG
O3
O3B
O
2ffq 1 Q9NRW1 83.95 4e-97 X-RAY
 2006-07-04 ASP A:57 A:68 4.0 0.027 E -101.7 117.9 4.0 0.027 0.0 MG
GSP
HOH
 3.896
4.671
2.567
 OD2
OD1
OD1
 MG
O2B
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9h0n0-f1 1 Q9H0N0 100.0 0.0 ASP A:68 A:68 4.0 0.027 E -89.1 116.9
af-q53s08-f1 1 Q53S08 98.82 0.0 ASP A:68 A:68 4.0 0.027 E -89.8 115.8
af-p20340-f1 1 P20340 89.9 2e-136 ASP A:68 A:68 6.0 0.04 E -85.0 121.9
af-q9nrw1-f1 1 Q9NRW1 82.21 2e-126 ASP A:68 A:68 5.0 0.033 E -84.6 123.2