Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 130737899 . G A CCDS46408.1:NM_032144.2:c.211Ggt>Agt_NP_115520.2:p.71G>S Homo sapiens RAB6C, member RAS oncogene family (RAB6C), mRNA.
pdb_id: 
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label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4dkx 1 P20340 90.87 4e-136 X-RAY
 2012-10-17 GLY A:71 A:71 18.0 0.24 84.8 -13.0 18.0 0.24 0.0 GDP
MG
HOH
 7.481
6.878
2.736
 N
N
N
 O1B
MG
O
GLY B:71 B:71 22.0 0.293 105.7 3.4 NA NA NA
3bbp 1 P20340 89.32 3e-132 X-RAY
 2008-02-05 GLY A:74 A:71 5.0 0.067 -77.9 -17.2 5.0 0.067 0.0 MG
GTP
 5.222
2.868
 N
N
 MG
O1G
GLY B:74 B:71 5.0 0.067 -76.7 -18.1 5.0 0.067 0.0 MG
GTP
 5.066
2.868
 N
N
 MG
O1G
GLY C:74 C:71 4.0 0.053 -77.7 -17.3 NA NA NA
5lef 1 P20340 88.48 3e-120 X-RAY
 2017-11-15 GLY A:67 A:71 7.0 0.093 -87.5 -21.6 7.0 0.093 0.0 GTP
MG
HOH
 2.093
5.278
2.470
 H
H
H
 O3G
MG
O
GLY B:67 B:71 7.0 0.093 -82.1 -20.7 7.0 0.093 0.0 GTP
MG
IPA
HOH
 2.267
5.159
9.436
2.345
 H
H
H
H
 O1G
MG
H31
O
3cwz 1 P20340 89.36 1e-119 X-RAY
 2008-11-18 GLY A:64 A:71 5.0 0.067 -97.9 -0.5 5.0 0.067 0.0 MG
GTP
HOH
 5.408
2.785
9.594
 N
N
O
 MG
O1G
O
1yzq 1 P20340 91.18 5e-110 X-RAY
 2005-07-26 GLY A:64 A:71 11.0 0.147 -93.3 -11.4 11.0 0.147 0.0 MG
GNP
HOH
 5.918
2.784
2.813
 N
N
O
 MG
O3G
O
2y8e 1 O18334 86.36 1e-109 X-RAY
 2011-07-06 GLY A:72 A:70 7.0 0.093 -86.6 -12.9 7.0 0.093 0.0 GNP
MG
HOH
 2.827
6.012
2.831
 N
N
O
 O1G
MG
O
GLY B:72 B:70 7.0 0.093 -85.8 -18.4 NA NA NA
2gil 1 P20340 89.51 3e-102 X-RAY
 2006-06-27 GLY A:59 A:71 6.0 0.08 -74.0 -28.9 6.0 0.08 0.0 MG
GTP
HOH
 5.926
2.864
3.690
 N
N
N
 MG
O3G
O
GLY B:59 B:71 6.0 0.08 -95.0 -7.8 NA NA NA
GLY C:59 C:71 4.0 0.053 -78.1 -24.8 NA NA NA
GLY D:59 D:71 14.0 0.187 -88.3 -16.2 NA NA NA
2e9s 1 Q9NRW1 83.95 4e-97 X-RAY
 2008-01-29 GLY A:60 A:71 7.0 0.093 -81.8 -15.3 7.0 0.093 0.0 NO3
MG
GDP
HOH
 2.678
6.217
6.019
2.861
 N
N
N
O
 O2
MG
O1B
O
GLY B:60 NA:NA DO NA DO DO DO NA NA NA
GLY C:60 C:71 48.0 0.64 T 84.4 -4.8 NA NA NA
2fe4 1 Q9NRW1 83.95 4e-97 X-RAY
 2006-07-04 GLY A:60 A:71 2.0 0.027 -83.3 -35.9 2.0 0.027 0.0 MG
NO3
GDP
HOH
 6.944
3.508
6.101
3.020
 N
N
N
O
 MG
O2
O1B
O
2ffq 1 Q9NRW1 83.95 4e-97 X-RAY
 2006-07-04 GLY A:60 A:71 11.0 0.147 -80.4 -21.9 11.0 0.147 0.0 MG
GSP
HOH
 5.898
2.593
3.289
 N
N
O
 MG
O3G
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9h0n0-f1 1 Q9H0N0 100.0 0.0 GLY A:71 A:71 8.0 0.107 S -71.8 18.0
af-q53s08-f1 1 Q53S08 98.82 0.0 GLY A:71 A:71 10.0 0.133 S -72.9 13.8
af-p20340-f1 1 P20340 89.9 2e-136 GLY A:71 A:71 7.0 0.093 -83.0 0.6
af-q9nrw1-f1 1 Q9NRW1 82.21 2e-126 GLY A:71 A:71 7.0 0.093 -82.7 0.6