Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 130737902 . C A CCDS46408.1:NM_032144.2:c.214Cag>Aag_NP_115520.2:p.72Q>K Homo sapiens RAB6C, member RAS oncogene family (RAB6C), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4dkx 1 P20340 90.87 4e-136 X-RAY
 2012-10-17 LEU A:72 A:72 17.0 0.1 T -58.5 -33.8 17.0 0.1 0.0 GDP
MG
HOH
 9.258
8.899
4.169
 N
N
N
 O1B
MG
O
LEU B:72 B:72 20.0 0.118 G -69.2 -18.3 NA NA NA
3bbp 1 P20340 89.32 3e-132 X-RAY
 2008-02-05 LEU A:75 A:72 22.0 0.129 S -62.8 141.2 22.0 0.129 0.0 MG
GTP
 7.293
4.366
 N
N
 MG
O1G
LEU B:75 B:72 22.0 0.129 S -62.8 141.5 22.0 0.129 0.0 MG
GTP
 7.195
4.365
 N
N
 MG
O1G
LEU C:75 C:72 24.0 0.141 S -63.3 141.0 NA NA NA
5lef 1 P20340 88.48 3e-120 X-RAY
 2017-11-15 LEU A:68 A:72 45.0 0.265 S -54.0 130.0 39.0 0.229 0.036 D:P97329:0.035
 GTP
MG
HOH
 4.058
7.233
2.327
 H
H
H
 O3G
MG
O
LEU B:68 B:72 46.0 0.271 S -57.9 135.1 24.0 0.141 0.13 C:P97329:0.129
 GTP
MG
HOH
 4.094
7.143
2.237
 HG
H
H
 O2G
MG
O
3cwz 1 P20340 89.36 1e-119 X-RAY
 2008-11-18 LEU A:65 A:72 45.0 0.265 -73.4 144.9 29.0 0.171 0.094 B:Q6PAL8:0.094
 MG
GTP
HOH
 7.762
4.114
9.422
 N
N
O
 MG
O2G
O
1yzq 1 P20340 91.18 5e-110 X-RAY
 2005-07-26 GLN A:65 A:72 37.0 0.206 S -64.9 135.8 37.0 0.206 0.0 MG
GNP
HOH
 7.751
4.320
2.803
 N
N
O
 MG
O3G
O
2y8e 1 O18334 86.36 1e-109 X-RAY
 2011-07-06 GLN A:73 A:71 36.0 0.2 S -66.5 131.7 36.0 0.2 0.0 GNP
MG
HOH
 4.619
8.182
2.598
 N
N
OE1
 O1G
MG
O
GLN B:73 B:71 45.0 0.25 S -63.0 137.8 NA NA NA
2gil 1 P20340 89.51 3e-102 X-RAY
 2006-06-27 GLN A:60 A:72 65.0 0.361 S -51.8 133.7 65.0 0.361 0.0 MG
GTP
HOH
 7.974
4.506
2.563
 N
N
OE1
 MG
O3G
O
GLN B:60 B:72 29.0 0.161 S -64.8 136.0 NA NA NA
GLN C:60 C:72 67.0 0.372 S -50.4 141.8 NA NA NA
GLN D:60 D:72 32.0 0.178 S -56.3 134.8 NA NA NA
2e9s 1 Q9NRW1 83.95 4e-97 X-RAY
 2008-01-29 GLN A:61 A:72 18.0 0.1 S -52.7 134.5 18.0 0.1 0.0 NO3
MG
GDP
HOH
 4.535
7.285
7.583
2.597
 N
NE2
NE2
O
 O2
MG
O1B
O
GLN B:61 NA:NA DO NA DO DO DO NA NA NA
GLN C:61 C:72 64.0 0.356 -123.0 0.6 NA NA NA
2fe4 1 Q9NRW1 83.95 4e-97 X-RAY
 2006-07-04 GLN A:61 A:72 110.0 0.611 S -84.4 120.8 110.0 0.611 0.0 MG
NO3
GDP
HOH
 8.483
4.677
6.860
2.773
 N
N
N
CG
 MG
O2
O1B
O
2ffq 1 Q9NRW1 83.95 4e-97 X-RAY
 2006-07-04 GLN A:61 A:72 52.0 0.289 S -61.3 139.4 52.0 0.289 0.0 MG
GSP
HOH
 7.825
3.985
2.728
 N
CG
O
 MG
S1G
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9h0n0-f1 1 Q9H0N0 100.0 0.0 GLN A:72 A:72 53.0 0.294 -88.7 139.5
af-q53s08-f1 1 Q53S08 98.82 0.0 GLN A:72 A:72 55.0 0.306 S -90.3 140.9
af-p20340-f1 1 P20340 89.9 2e-136 GLN A:72 A:72 41.0 0.228 S -80.4 137.8
af-q9nrw1-f1 1 Q9NRW1 82.21 2e-126 GLN A:72 A:72 45.0 0.25 S -80.8 137.5