Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 130737936 . T A CCDS46408.1:NM_032144.2:c.248aTc>aAc_NP_115520.2:p.83I>N Homo sapiens RAB6C, member RAS oncogene family (RAB6C), mRNA.
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4dkx 1 P20340 90.87 4e-136 X-RAY
 2012-10-17 ILE A:83 A:83 1.0 0.006 H -94.9 6.7 1.0 0.006 0.0 HOH
 4.424
 CD1
 O
ILE B:83 B:83 0.0 0.0 H -73.4 -22.3 NA NA NA
3bbp 1 P20340 89.32 3e-132 X-RAY
 2008-02-05 ILE A:86 A:83 4.0 0.023 H -58.1 -38.2 4.0 0.023 0.0
ILE B:86 B:83 4.0 0.023 H -58.4 -39.2 4.0 0.023 0.0
ILE C:86 C:83 4.0 0.023 H -58.1 -39.1 NA NA NA
5lef 1 P20340 88.48 3e-120 X-RAY
 2017-11-15 ILE A:79 A:83 4.0 0.023 H -61.2 -45.1 4.0 0.023 0.0 HOH
 3.219
 HD12
 O
ILE B:79 B:83 5.0 0.029 H -69.2 -35.8 5.0 0.029 0.0 HOH
 6.378
 N
 O
3cwz 1 P20340 89.36 1e-119 X-RAY
 2008-11-18 ILE A:76 A:83 4.0 0.023 H -82.8 -25.1 4.0 0.023 0.0 HOH
 7.792
 CG1
 O
1yzq 1 P20340 91.18 5e-110 X-RAY
 2005-07-26 ILE A:76 A:83 2.0 0.011 H -74.7 -32.5 2.0 0.011 0.0 HOH
 4.407
 CD1
 O
2y8e 1 O18334 86.36 1e-109 X-RAY
 2011-07-06 ILE A:84 A:82 1.0 0.006 H -57.5 -43.3 1.0 0.006 0.0 HOH
 3.012
 O
 O
ILE B:84 B:82 2.0 0.011 H -59.8 -45.7 NA NA NA
2gil 1 P20340 89.51 3e-102 X-RAY
 2006-06-27 ILE A:71 A:83 5.0 0.029 H -64.9 -40.0 5.0 0.029 0.0 HOH
 2.577
 O
 O
ILE B:71 B:83 4.0 0.023 H -62.2 -45.5 NA NA NA
ILE C:71 C:83 6.0 0.034 H -60.0 -44.0 NA NA NA
ILE D:71 D:83 3.0 0.017 H -62.0 -51.1 NA NA NA
2e9s 1 Q9NRW1 83.95 4e-97 X-RAY
 2008-01-29 ILE A:72 A:83 3.0 0.017 H -62.6 -42.3 3.0 0.017 0.0 HOH
 6.433
 N
 O
ILE B:72 B:83 2.0 0.011 H -59.3 -39.6 NA NA NA
ILE C:72 C:83 1.0 0.006 H -73.9 -42.9 NA NA NA
2fe4 1 Q9NRW1 83.95 4e-97 X-RAY
 2006-07-04 ILE A:72 A:83 4.0 0.023 H -67.5 -41.0 4.0 0.023 0.0 HOH
 6.645
 C
 O
2ffq 1 Q9NRW1 83.95 4e-97 X-RAY
 2006-07-04 ILE A:72 A:83 3.0 0.017 H -67.3 -49.6 3.0 0.017 0.0 HOH
 6.591
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9h0n0-f1 1 Q9H0N0 100.0 0.0 ILE A:83 A:83 2.0 0.011 H -63.2 -44.3
af-q53s08-f1 1 Q53S08 98.82 0.0 ILE A:83 A:83 1.0 0.006 H -65.4 -45.1
af-p20340-f1 1 P20340 89.9 2e-136 ILE A:83 A:83 3.0 0.017 H -64.0 -51.1
af-q9nrw1-f1 1 Q9NRW1 82.21 2e-126 ILE A:83 A:83 2.0 0.011 H -65.3 -50.0