Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 130737938 . C A CCDS46408.1:NM_032144.2:c.250Cgt>Agt_NP_115520.2:p.84R>S Homo sapiens RAB6C, member RAS oncogene family (RAB6C), mRNA.
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4dkx 1 P20340 90.87 4e-136 X-RAY
 2012-10-17 ARG A:84 A:84 113.0 0.502 T -39.1 -60.5 113.0 0.502 0.0 HOH
 2.215
 O
 O
ARG B:84 B:84 101.0 0.449 T -37.8 -55.0 NA NA NA
3bbp 1 P20340 89.32 3e-132 X-RAY
 2008-02-05 ARG A:87 A:84 133.0 0.591 T -65.1 -25.4 133.0 0.591 0.0
ARG B:87 B:84 133.0 0.591 T -64.3 -25.3 133.0 0.591 0.0
ARG C:87 C:84 133.0 0.591 T -64.4 -25.5 NA NA NA
5lef 1 P20340 88.48 3e-120 X-RAY
 2017-11-15 ARG A:80 A:84 120.0 0.533 H -58.4 -39.5 73.0 0.324 0.209 D:P97329:0.209
ARG B:80 B:84 129.0 0.573 H -60.2 -41.9 118.0 0.524 0.049 C:P97329:0.049
 HOH
 5.825
 HB2
 O
3cwz 1 P20340 89.36 1e-119 X-RAY
 2008-11-18 ARG A:77 A:84 114.0 0.507 T -42.8 127.0 78.0 0.347 0.16 B:Q6PAL8:0.16
 HOH
 5.719
 NH1
 O
1yzq 1 P20340 91.18 5e-110 X-RAY
 2005-07-26 ARG A:77 A:84 107.0 0.476 T -40.0 124.9 107.0 0.476 0.0 HOH
 2.723
 NE
 O
2y8e 1 O18334 86.36 1e-109 X-RAY
 2011-07-06 ARG A:85 A:83 129.0 0.573 H -56.1 -35.3 129.0 0.573 0.0 SO4
HOH
 8.045
3.358
 O
CD
 O1
O
ARG B:85 B:83 155.0 0.689 H -59.8 -30.7 NA NA NA
2gil 1 P20340 89.51 3e-102 X-RAY
 2006-06-27 ARG A:72 A:84 120.0 0.533 H -67.1 -27.0 120.0 0.533 0.0 HOH
 3.061
 NH2
 O
ARG B:72 B:84 111.0 0.493 H -63.2 -40.0 NA NA NA
ARG C:72 C:84 134.0 0.596 H -55.9 -39.2 NA NA NA
ARG D:72 D:84 113.0 0.502 H -50.0 -39.9 NA NA NA
2e9s 1 Q9NRW1 83.95 4e-97 X-RAY
 2008-01-29 ARG A:73 A:84 126.0 0.56 H -60.9 -32.5 126.0 0.56 0.0 HOH
 2.522
 NE
 O
ARG B:73 B:84 167.0 0.742 H -67.8 -27.3 NA NA NA
ARG C:73 C:84 133.0 0.591 T -48.7 135.2 NA NA NA
2fe4 1 Q9NRW1 83.95 4e-97 X-RAY
 2006-07-04 ARG A:73 A:84 157.0 0.698 H -57.2 -40.7 157.0 0.698 0.0 HOH
 3.204
 CD
 O
2ffq 1 Q9NRW1 83.95 4e-97 X-RAY
 2006-07-04 ARG A:73 A:84 142.0 0.631 H -49.3 -40.8 142.0 0.631 0.0 HOH
 3.589
 NH1
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9h0n0-f1 1 Q9H0N0 100.0 0.0 ARG A:84 A:84 143.0 0.636 H -51.9 -34.2
af-q53s08-f1 1 Q53S08 98.82 0.0 ARG A:84 A:84 126.0 0.56 T -48.1 136.2
af-p20340-f1 1 P20340 89.9 2e-136 ARG A:84 A:84 124.0 0.551 H -53.6 -30.6
af-q9nrw1-f1 1 Q9NRW1 82.21 2e-126 ARG A:84 A:84 134.0 0.596 H -54.7 -29.3