Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr2 | 130737965 | . | T | A | CCDS46408.1:NM_032144.2:c.277Tac>Aac_NP_115520.2:p.93Y>N | Homo sapiens RAB6C, member RAS oncogene family (RAB6C), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 4dkx | 1 | P20340 | 90.87 | 4e-136 |
X-RAY |
2012-10-17 | TYR | A:93 | A:93 | 0.0 | 0.0 | E | -129.2 | 174.0 | 0.0 | 0.0 | 0.0 |
GDP HOH |
8.130 2.639 |
N OH |
O3B O |
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| TYR | B:93 | B:93 | 0.0 | 0.0 | E | -124.2 | 169.3 | NA | NA | NA | |||||||||||||
| 3bbp | 1 | P20340 | 89.32 | 3e-132 |
X-RAY |
2008-02-05 | TYR | A:96 | A:93 | 0.0 | 0.0 | E | -129.4 | 168.8 | 0.0 | 0.0 | 0.0 |
GTP |
7.943 |
N |
O1B |
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| TYR | B:96 | B:93 | 0.0 | 0.0 | E | -129.7 | 168.4 | 0.0 | 0.0 | 0.0 |
GTP |
7.947 |
N |
O1B |
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| TYR | C:96 | C:93 | 0.0 | 0.0 | E | -129.6 | 168.4 | NA | NA | NA | |||||||||||||
| 5lef | 1 | P20340 | 88.48 | 3e-120 |
X-RAY |
2017-11-15 | TYR | A:89 | A:93 | 0.0 | 0.0 | E | -130.8 | 173.3 | 0.0 | 0.0 | 0.0 |
GTP GOL HOH |
7.499 8.902 1.860 |
HA OH HH |
O2B HO2 O |
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| TYR | B:89 | B:93 | 0.0 | 0.0 | E | -129.7 | 173.8 | 0.0 | 0.0 | 0.0 |
GTP HOH |
7.445 1.810 |
HA HH |
O1B O |
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| 3cwz | 1 | P20340 | 89.36 | 1e-119 |
X-RAY |
2008-11-18 | TYR | A:86 | A:93 | 3.0 | 0.013 | E | -132.5 | 146.7 | 3.0 | 0.013 | 0.0 |
GTP |
8.013 |
N |
O1B |
||
| 1yzq | 1 | P20340 | 91.18 | 5e-110 |
X-RAY |
2005-07-26 | TYR | A:86 | A:93 | 0.0 | 0.0 | E | -125.8 | 172.4 | 0.0 | 0.0 | 0.0 |
GNP HOH |
7.968 2.503 |
O OH |
O6 O |
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| 2y8e | 1 | O18334 | 86.36 | 1e-109 |
X-RAY |
2011-07-06 | TYR | A:94 | A:92 | 0.0 | 0.0 | E | -128.4 | 174.6 | 0.0 | 0.0 | 0.0 |
GNP HOH |
7.925 2.648 |
N OH |
O2B O |
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| TYR | B:94 | B:92 | 0.0 | 0.0 | E | -128.1 | 170.7 | NA | NA | NA | |||||||||||||
| 2gil | 1 | P20340 | 89.51 | 3e-102 |
X-RAY |
2006-06-27 | TYR | A:81 | A:93 | 0.0 | 0.0 | E | -127.6 | 173.8 | 0.0 | 0.0 | 0.0 |
GTP HOH |
7.945 2.678 |
O OH |
N7 O |
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| TYR | B:81 | B:93 | 0.0 | 0.0 | E | -132.9 | 176.2 | NA | NA | NA | |||||||||||||
| TYR | C:81 | C:93 | 0.0 | 0.0 | E | -128.7 | 176.0 | NA | NA | NA | |||||||||||||
| TYR | D:81 | D:93 | 0.0 | 0.0 | E | -125.1 | 176.6 | NA | NA | NA | |||||||||||||
| 2e9s | 1 | Q9NRW1 | 83.95 | 4e-97 |
X-RAY |
2008-01-29 | TYR | A:82 | A:93 | 0.0 | 0.0 | E | -133.6 | 167.7 | 0.0 | 0.0 | 0.0 |
GDP HOH |
7.944 2.609 |
N OH |
O2B O |
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| TYR | B:82 | B:93 | 0.0 | 0.0 | E | -132.3 | 172.8 | NA | NA | NA | |||||||||||||
| TYR | C:82 | C:93 | 0.0 | 0.0 | E | -131.4 | 168.5 | NA | NA | NA | |||||||||||||
| 2fe4 | 1 | Q9NRW1 | 83.95 | 4e-97 |
X-RAY |
2006-07-04 | TYR | A:82 | A:93 | 0.0 | 0.0 | E | -134.9 | 172.6 | 0.0 | 0.0 | 0.0 |
GDP HOH |
7.863 2.606 |
N OH |
O2B O |
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| 2ffq | 1 | Q9NRW1 | 83.95 | 4e-97 |
X-RAY |
2006-07-04 | TYR | A:82 | A:93 | 0.0 | 0.0 | E | -130.2 | 169.4 | 0.0 | 0.0 | 0.0 |
GSP HOH |
8.071 2.537 |
O OH |
O6 O |
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AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-q9h0n0-f1 | 1 | Q9H0N0 | 100.0 | 0.0 | TYR | A:93 | A:93 | 0.0 | 0.0 | E | -127.5 | 164.8 | |
| af-q53s08-f1 | 1 | Q53S08 | 98.82 | 0.0 | TYR | A:93 | A:93 | 0.0 | 0.0 | E | -127.4 | 164.4 | |
| af-p20340-f1 | 1 | P20340 | 89.9 | 2e-136 | TYR | A:93 | A:93 | 0.0 | 0.0 | E | -125.2 | 164.6 | |
| af-q9nrw1-f1 | 1 | Q9NRW1 | 82.21 | 2e-126 | TYR | A:93 | A:93 | 0.0 | 0.0 | E | -123.0 | 164.7 | |