Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 130737968 . G A CCDS46408.1:NM_032144.2:c.280Gat>Aat_NP_115520.2:p.94D>N Homo sapiens RAB6C, member RAS oncogene family (RAB6C), mRNA.
pdb_id: 
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auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4dkx 1 P20340 90.87 4e-136 X-RAY
 2012-10-17 ASP A:94 A:94 13.0 0.087 E -108.6 125.1 13.0 0.087 0.0 GDP
HOH
 6.303
2.696
 OD2
OD2
 O4'
O
ASP B:94 B:94 11.0 0.073 E -100.3 119.5 NA NA NA
3bbp 1 P20340 89.32 3e-132 X-RAY
 2008-02-05 ASP A:97 A:94 10.0 0.067 E -109.5 118.0 10.0 0.067 0.0 GTP
 6.274
 OD2
 O4'
ASP B:97 B:94 10.0 0.067 E -108.6 118.1 10.0 0.067 0.0 GTP
 6.271
 OD2
 O4'
ASP C:97 C:94 10.0 0.067 E -108.3 117.8 NA NA NA
5lef 1 P20340 88.48 3e-120 X-RAY
 2017-11-15 ASP A:90 A:94 13.0 0.087 E -109.8 118.1 13.0 0.087 0.0 GTP
HOH
 6.214
2.916
 OD2
OD2
 O4'
O
ASP B:90 B:94 13.0 0.087 E -109.9 120.3 13.0 0.087 0.0 GTP
HOH
 6.151
3.122
 OD2
OD2
 O4'
O
3cwz 1 P20340 89.36 1e-119 X-RAY
 2008-11-18 ASP A:87 A:94 13.0 0.087 E -73.0 154.1 13.0 0.087 0.0 GTP
HOH
 6.695
9.600
 OD2
OD2
 C4
O
1yzq 1 P20340 91.18 5e-110 X-RAY
 2005-07-26 ASP A:87 A:94 13.0 0.087 E -111.5 115.3 13.0 0.087 0.0 GNP
HOH
 6.422
2.488
 OD2
OD2
 O4'
O
2y8e 1 O18334 86.36 1e-109 X-RAY
 2011-07-06 ASP A:95 A:93 13.0 0.087 E -110.9 119.4 13.0 0.087 0.0 GNP
HOH
 6.403
2.700
 OD2
OD2
 O4'
O
ASP B:95 B:93 13.0 0.087 E -108.2 117.6 NA NA NA
2gil 1 P20340 89.51 3e-102 X-RAY
 2006-06-27 ASP A:82 A:94 6.0 0.04 E -105.1 115.2 6.0 0.04 0.0 GTP
HOH
 6.167
2.679
 OD2
OD2
 O4'
O
ASP B:82 B:94 10.0 0.067 E -114.6 121.0 NA NA NA
ASP C:82 C:94 10.0 0.067 E -111.5 116.3 NA NA NA
ASP D:82 D:94 11.0 0.073 E -112.0 118.0 NA NA NA
2e9s 1 Q9NRW1 83.95 4e-97 X-RAY
 2008-01-29 ASP A:83 A:94 12.0 0.08 E -104.3 120.4 12.0 0.08 0.0 GDP
HOH
 6.484
2.641
 OD1
OD1
 O4'
O
ASP B:83 B:94 11.0 0.073 E -110.3 119.5 NA NA NA
ASP C:83 C:94 12.0 0.08 E -104.4 119.7 NA NA NA
2fe4 1 Q9NRW1 83.95 4e-97 X-RAY
 2006-07-04 ASP A:83 A:94 10.0 0.067 E -111.4 115.9 10.0 0.067 0.0 GDP
HOH
 6.245
4.085
 OD1
CB
 O4'
O
2ffq 1 Q9NRW1 83.95 4e-97 X-RAY
 2006-07-04 ASP A:83 A:94 11.0 0.073 E -106.8 120.5 11.0 0.073 0.0 GSP
HOH
 6.421
2.640
 OD1
OD1
 O4'
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9h0n0-f1 1 Q9H0N0 100.0 0.0 ASP A:94 A:94 4.0 0.027 E -99.5 123.3
af-q53s08-f1 1 Q53S08 98.82 0.0 ASP A:94 A:94 6.0 0.04 E -98.3 123.0
af-p20340-f1 1 P20340 89.9 2e-136 ASP A:94 A:94 6.0 0.04 E -100.1 123.3
af-q9nrw1-f1 1 Q9NRW1 82.21 2e-126 ASP A:94 A:94 6.0 0.04 E -101.2 122.8