Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 130737977 . A C CCDS46408.1:NM_032144.2:c.289Aat>Cat_NP_115520.2:p.97N>H Homo sapiens RAB6C, member RAS oncogene family (RAB6C), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4dkx 1 P20340 90.87 4e-136 X-RAY
 2012-10-17 ASN A:97 A:97 68.0 0.425 -128.4 99.1 68.0 0.425 0.0 HOH
 3.164
 OD1
 O
ASN B:97 B:97 65.0 0.406 -142.4 100.3 NA NA NA
3bbp 1 P20340 89.32 3e-132 X-RAY
 2008-02-05 ASN A:100 A:97 71.0 0.444 -134.1 110.9 71.0 0.444 0.0
ASN B:100 B:97 71.0 0.444 -133.1 110.8 71.0 0.444 0.0
ASN C:100 C:97 70.0 0.438 -133.8 111.2 NA NA NA
5lef 1 P20340 88.48 3e-120 X-RAY
 2017-11-15 ASN A:93 A:97 71.0 0.444 -132.9 105.5 71.0 0.444 0.0 GTP
HOH
 9.151
2.403
 HB2
HD21
 H5'
O
ASN B:93 B:97 67.0 0.419 -138.7 102.1 67.0 0.419 0.0 GTP
HOH
 9.131
2.392
 HB2
HD21
 H5'
O
3cwz 1 P20340 89.36 1e-119 X-RAY
 2008-11-18 ASN A:90 A:97 62.0 0.388 -134.3 133.3 62.0 0.388 0.0
1yzq 1 P20340 91.18 5e-110 X-RAY
 2005-07-26 ASN A:90 A:97 69.0 0.431 -123.5 99.4 69.0 0.431 0.0 HOH
 3.008
 ND2
 O
2y8e 1 O18334 86.36 1e-109 X-RAY
 2011-07-06 ASN A:98 A:96 69.0 0.431 -130.6 102.5 69.0 0.431 0.0 HOH
 3.210
 OD1
 O
ASN B:98 B:96 68.0 0.425 -140.5 101.6 NA NA NA
2gil 1 P20340 89.51 3e-102 X-RAY
 2006-06-27 ASN A:85 A:97 62.0 0.388 -128.5 98.3 62.0 0.388 0.0 GTP
HOH
 9.809
2.774
 ND2
ND2
 O4'
O
ASN B:85 B:97 64.0 0.4 -130.2 98.2 NA NA NA
ASN C:85 C:97 72.0 0.45 -128.7 100.1 NA NA NA
ASN D:85 D:97 63.0 0.394 -132.0 99.6 NA NA NA
2e9s 1 Q9NRW1 83.95 4e-97 X-RAY
 2008-01-29 ASN A:86 A:97 67.0 0.419 -126.4 100.1 67.0 0.419 0.0 HOH
 3.150
 ND2
 O
ASN B:86 B:97 68.0 0.425 -123.7 106.3 NA NA NA
ASN C:86 C:97 68.0 0.425 -125.3 98.5 NA NA NA
2fe4 1 Q9NRW1 83.95 4e-97 X-RAY
 2006-07-04 ASN A:86 A:97 62.0 0.388 -122.6 100.6 62.0 0.388 0.0 GDP
HOH
 9.869
3.468
 CB
OD1
 O4'
O
2ffq 1 Q9NRW1 83.95 4e-97 X-RAY
 2006-07-04 ASN A:86 A:97 63.0 0.394 -122.5 106.5 63.0 0.394 0.0 HOH
 3.073
 OD1
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9h0n0-f1 1 Q9H0N0 100.0 0.0 ASN A:97 A:97 55.0 0.344 -136.8 100.9
af-q53s08-f1 1 Q53S08 98.82 0.0 ASN A:97 A:97 55.0 0.344 -139.4 99.5
af-p20340-f1 1 P20340 89.9 2e-136 ASN A:97 A:97 55.0 0.344 -135.9 96.1
af-q9nrw1-f1 1 Q9NRW1 82.21 2e-126 ASN A:97 A:97 52.0 0.325 -132.0 95.9