Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 130738031 . A C CCDS46408.1:NM_032144.2:c.343Aga>Cga_NP_115520.2:p.115R>R Homo sapiens RAB6C, member RAS oncogene family (RAB6C), mRNA.
pdb_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4dkx 1 P20340 90.87 4e-136 X-RAY
 2012-10-17 ARG A:115 A:115 48.0 0.213 H -117.1 -7.6 48.0 0.213 0.0 HOH
 3.198
 NH1
 O
ARG B:115 B:115 45.0 0.2 H -116.7 -13.9 NA NA NA
3bbp 1 P20340 89.32 3e-132 X-RAY
 2008-02-05 ARG A:118 A:115 60.0 0.267 H -144.4 -8.0 60.0 0.267 0.0
ARG B:118 B:115 59.0 0.262 H -143.7 -8.3 59.0 0.262 0.0
ARG C:118 C:115 60.0 0.267 H -144.3 -7.7 NA NA NA
5lef 1 P20340 88.48 3e-120 X-RAY
 2017-11-15 ARG A:111 A:115 63.0 0.28 H -128.1 -17.6 63.0 0.28 0.0 HOH
 4.721
 O
 O
ARG B:111 B:115 70.0 0.311 H -133.3 -16.3 70.0 0.311 0.0 HOH
 7.701
 HB2
 O
3cwz 1 P20340 89.36 1e-119 X-RAY
 2008-11-18 ARG A:108 A:115 58.0 0.258 S -94.9 166.8 58.0 0.258 0.0
1yzq 1 P20340 91.18 5e-110 X-RAY
 2005-07-26 ARG A:108 A:115 52.0 0.231 H -115.0 -15.7 52.0 0.231 0.0 HOH
 2.992
 NH1
 O
2y8e 1 O18334 86.36 1e-109 X-RAY
 2011-07-06 ARG A:116 A:114 45.0 0.2 H -127.7 -6.9 45.0 0.2 0.0 SO4
HOH
 7.824
3.604
 NH1
CD
 O1
O
ARG B:116 B:114 50.0 0.222 H -131.5 -1.0 NA NA NA
2gil 1 P20340 89.51 3e-102 X-RAY
 2006-06-27 ARG A:103 A:115 61.0 0.271 H -134.1 -12.5 61.0 0.271 0.0 HOH
 2.731
 NH2
 O
ARG B:103 B:115 65.0 0.289 H -133.8 -12.2 NA NA NA
ARG C:103 C:115 72.0 0.32 H -105.9 -21.3 NA NA NA
ARG D:103 D:115 77.0 0.342 H -117.7 -22.2 NA NA NA
2e9s 1 Q9NRW1 83.95 4e-97 X-RAY
 2008-01-29 ARG A:104 A:115 40.0 0.178 H -109.6 -9.3 40.0 0.178 0.0 HOH
 4.002
 NH2
 O
ARG B:104 B:115 50.0 0.222 H -114.9 -4.8 NA NA NA
ARG C:104 C:115 46.0 0.204 H -106.3 -18.5 NA NA NA
2fe4 1 Q9NRW1 83.95 4e-97 X-RAY
 2006-07-04 ARG A:104 A:115 53.0 0.236 T 171.2 -3.1 53.0 0.236 0.0 HOH
 3.865
 N
 O
2ffq 1 Q9NRW1 83.95 4e-97 X-RAY
 2006-07-04 ARG A:104 A:115 55.0 0.244 H -111.3 -22.1 55.0 0.244 0.0 HOH
 3.114
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9h0n0-f1 1 Q9H0N0 100.0 0.0 ARG A:115 A:115 87.0 0.387 H -109.0 -28.1
af-q53s08-f1 1 Q53S08 98.82 0.0 GLY A:115 A:115 26.0 0.347 H -95.3 -21.9
af-p20340-f1 1 P20340 89.9 2e-136 ARG A:115 A:115 91.0 0.404 H -116.2 -11.8
af-q9nrw1-f1 1 Q9NRW1 82.21 2e-126 ARG A:115 A:115 71.0 0.316 H -119.8 -9.6