Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 130738034 . G A CCDS46408.1:NM_032144.2:c.346Gga>Aga_NP_115520.2:p.116G>R Homo sapiens RAB6C, member RAS oncogene family (RAB6C), mRNA.
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4dkx 1 P20340 90.87 4e-136 X-RAY
 2012-10-17 GLY A:116 A:116 33.0 0.44 T 62.5 -145.3 33.0 0.44 0.0 HOH
 3.315
 O
 O
GLY B:116 B:116 37.0 0.493 T 63.3 -133.4 NA NA NA
3bbp 1 P20340 89.32 3e-132 X-RAY
 2008-02-05 GLY A:119 A:116 28.0 0.373 T 58.7 -117.0 28.0 0.373 0.0
GLY B:119 B:116 30.0 0.4 T 58.6 -117.0 30.0 0.4 0.0
GLY C:119 C:116 29.0 0.387 T 58.1 -116.8 NA NA NA
5lef 1 P20340 88.48 3e-120 X-RAY
 2017-11-15 GLY A:112 A:116 31.0 0.413 T 66.0 -134.7 31.0 0.413 0.0 HOH
 3.186
 HA3
 O
GLY B:112 B:116 33.0 0.44 T 63.7 -124.0 33.0 0.44 0.0 HOH
 5.641
 O
 O
3cwz 1 P20340 89.36 1e-119 X-RAY
 2008-11-18 GLY A:109 A:116 37.0 0.493 -79.8 -141.3 37.0 0.493 0.0
1yzq 1 P20340 91.18 5e-110 X-RAY
 2005-07-26 GLY A:109 A:116 34.0 0.453 T 60.3 -122.1 34.0 0.453 0.0 HOH
 3.471
 CA
 O
2y8e 1 O18334 86.36 1e-109 X-RAY
 2011-07-06 GLY A:117 A:115 32.0 0.427 T 55.7 -129.9 32.0 0.427 0.0 HOH
 4.850
 O
 O
GLY B:117 B:115 36.0 0.48 T 52.0 -125.3 NA NA NA
2gil 1 P20340 89.51 3e-102 X-RAY
 2006-06-27 GLY A:104 A:116 29.0 0.387 T 56.3 -124.7 29.0 0.387 0.0 HOH
 4.320
 C
 O
GLY B:104 B:116 29.0 0.387 T 53.8 -119.9 NA NA NA
GLY C:104 C:116 31.0 0.413 T 56.6 -122.3 NA NA NA
GLY D:104 D:116 31.0 0.413 T 76.5 -133.1 NA NA NA
2e9s 1 Q9NRW1 83.95 4e-97 X-RAY
 2008-01-29 GLY A:105 A:116 35.0 0.467 T 63.5 -125.5 35.0 0.467 0.0 HOH
 6.155
 N
 O
GLY B:105 B:116 33.0 0.44 T 66.2 -125.4 NA NA NA
GLY C:105 C:116 33.0 0.44 T 66.8 -128.8 NA NA NA
2fe4 1 Q9NRW1 83.95 4e-97 X-RAY
 2006-07-04 GLY A:105 A:116 40.0 0.533 T 78.2 -139.7 40.0 0.533 0.0 HOH
 3.556
 CA
 O
2ffq 1 Q9NRW1 83.95 4e-97 X-RAY
 2006-07-04 GLY A:105 A:116 32.0 0.427 T 70.2 -134.9 32.0 0.427 0.0 HOH
 2.752
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9h0n0-f1 1 Q9H0N0 100.0 0.0 GLY A:116 A:116 31.0 0.413 92.2 -164.2
af-q53s08-f1 1 Q53S08 98.82 0.0 GLY A:116 A:116 34.0 0.453 87.9 -179.7
af-p20340-f1 1 P20340 89.9 2e-136 GLY A:116 A:116 33.0 0.44 T 67.7 -149.1
af-q9nrw1-f1 1 Q9NRW1 82.21 2e-126 GLY A:116 A:116 34.0 0.453 T 64.5 -143.8