Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 130738043 . G A CCDS46408.1:NM_032144.2:c.355Gtt>Att_NP_115520.2:p.119V>I Homo sapiens RAB6C, member RAS oncogene family (RAB6C), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4dkx 1 P20340 90.87 4e-136 X-RAY
 2012-10-17 VAL A:119 A:119 16.0 0.103 S -163.5 134.7 16.0 0.103 0.0 HOH
 3.785
 O
 O
VAL B:119 B:119 11.0 0.071 S -168.6 142.6 NA NA NA
3bbp 1 P20340 89.32 3e-132 X-RAY
 2008-02-05 VAL A:122 A:119 20.0 0.129 S -159.3 146.4 20.0 0.129 0.0
VAL B:122 B:119 20.0 0.129 S -159.6 146.3 20.0 0.129 0.0
VAL C:122 C:119 19.0 0.123 S -159.4 146.7 NA NA NA
5lef 1 P20340 88.48 3e-120 X-RAY
 2017-11-15 VAL A:115 A:119 11.0 0.071 S -141.4 141.2 11.0 0.071 0.0 HOH
 4.166
 O
 O
VAL B:115 B:119 14.0 0.09 S -134.7 142.8 14.0 0.09 0.0 HOH
 2.948
 O
 O
3cwz 1 P20340 89.36 1e-119 X-RAY
 2008-11-18 VAL A:112 A:119 2.0 0.013 S -66.4 117.6 2.0 0.013 0.0
1yzq 1 P20340 91.18 5e-110 X-RAY
 2005-07-26 VAL A:112 A:119 17.0 0.11 S -149.4 139.0 17.0 0.11 0.0 HOH
 2.552
 O
 O
2y8e 1 O18334 86.36 1e-109 X-RAY
 2011-07-06 VAL A:120 A:118 23.0 0.148 S -167.7 151.8 23.0 0.148 0.0 HOH
 2.705
 O
 O
VAL B:120 B:118 23.0 0.148 S -169.7 147.1 NA NA NA
2gil 1 P20340 89.51 3e-102 X-RAY
 2006-06-27 VAL A:107 A:119 23.0 0.148 S -170.5 146.7 23.0 0.148 0.0 HOH
 3.797
 CA
 O
VAL B:107 B:119 10.0 0.065 -145.0 143.9 NA NA NA
VAL C:107 C:119 15.0 0.097 -148.9 146.0 NA NA NA
VAL D:107 D:119 12.0 0.077 S -154.7 140.3 NA NA NA
2e9s 1 Q9NRW1 83.95 4e-97 X-RAY
 2008-01-29 VAL A:108 A:119 22.0 0.142 S -168.3 153.4 22.0 0.142 0.0 HOH
 3.604
 CA
 O
VAL B:108 B:119 25.0 0.161 S -168.6 155.7 NA NA NA
VAL C:108 C:119 23.0 0.148 S -166.9 157.2 NA NA NA
2fe4 1 Q9NRW1 83.95 4e-97 X-RAY
 2006-07-04 VAL A:108 A:119 30.0 0.194 S -161.8 155.7 30.0 0.194 0.0 HOH
 4.068
 CG1
 O
2ffq 1 Q9NRW1 83.95 4e-97 X-RAY
 2006-07-04 VAL A:108 A:119 25.0 0.161 -154.3 151.0 25.0 0.161 0.0 HOH
 3.924
 CA
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9h0n0-f1 1 Q9H0N0 100.0 0.0 VAL A:119 A:119 15.0 0.097 S -70.7 134.3
af-q53s08-f1 1 Q53S08 98.82 0.0 VAL A:119 A:119 14.0 0.09 S -71.3 123.9
af-p20340-f1 1 P20340 89.9 2e-136 VAL A:119 A:119 12.0 0.077 S -92.7 132.1
af-q9nrw1-f1 1 Q9NRW1 82.21 2e-126 VAL A:119 A:119 13.0 0.084 S -124.0 131.0