Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 130738068 . G A CCDS46408.1:NM_032144.2:c.380aGa>aAa_NP_115520.2:p.127R>K Homo sapiens RAB6C, member RAS oncogene family (RAB6C), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4dkx 1 P20340 90.87 4e-136 X-RAY
 2012-10-17 LYS A:127 A:127 50.0 0.25 77.6 34.7 50.0 0.25 0.0 GDP
HOH
 3.323
3.060
 NZ
NZ
 O4'
O
LYS B:127 B:127 50.0 0.25 80.0 36.0 NA NA NA
3bbp 1 P20340 89.32 3e-132 X-RAY
 2008-02-05 LYS A:130 A:127 55.0 0.275 77.6 44.9 55.0 0.275 0.0 GTP
 3.039
 NZ
 O4'
LYS B:130 B:127 58.0 0.29 78.7 44.3 58.0 0.29 0.0 GTP
 3.019
 NZ
 O4'
LYS C:130 C:127 56.0 0.28 78.5 44.2 NA NA NA
5lef 1 P20340 88.48 3e-120 X-RAY
 2017-11-15 LYS A:123 A:127 46.0 0.23 78.9 39.0 46.0 0.23 0.0 GTP
MG
HOH
 2.661
9.820
2.056
 HA
HZ1
HZ3
 O6
MG
O
LYS B:123 B:127 49.0 0.245 79.4 40.5 49.0 0.245 0.0 GTP
MG
IPA
HOH
 2.661
9.750
7.219
2.129
 HA
HZ1
HE2
HZ3
 O6
MG
H11
O
3cwz 1 P20340 89.36 1e-119 X-RAY
 2008-11-18 LYS A:120 A:127 60.0 0.3 65.2 46.7 60.0 0.3 0.0 GTP
HOH
 3.126
6.541
 NZ
CE
 N9
O
1yzq 1 P20340 91.18 5e-110 X-RAY
 2005-07-26 LYS A:120 A:127 47.0 0.235 80.2 36.1 47.0 0.235 0.0 GNP
HOH
 3.115
2.694
 NZ
NZ
 O4'
O
2y8e 1 O18334 86.36 1e-109 X-RAY
 2011-07-06 LYS A:128 A:126 51.0 0.255 79.8 37.7 51.0 0.255 0.0 GNP
HOH
 3.349
2.881
 NZ
NZ
 O4'
O
LYS B:128 B:126 42.0 0.21 85.8 41.1 NA NA NA
2gil 1 P20340 89.51 3e-102 X-RAY
 2006-06-27 LYS A:115 A:127 53.0 0.265 77.8 35.9 53.0 0.265 0.0 GTP
HOH
 3.102
2.561
 NZ
NZ
 O4'
O
LYS B:115 B:127 51.0 0.255 75.7 32.4 NA NA NA
LYS C:115 C:127 53.0 0.265 85.8 31.8 NA NA NA
LYS D:115 D:127 50.0 0.25 82.2 34.5 NA NA NA
2e9s 1 Q9NRW1 83.95 4e-97 X-RAY
 2008-01-29 LYS A:116 A:127 54.0 0.27 75.6 34.1 54.0 0.27 0.0 NO3
GDP
HOH
 9.527
3.107
2.884
 NZ
NZ
NZ
 O1
O4'
O
LYS B:116 B:127 51.0 0.255 75.8 37.6 NA NA NA
LYS C:116 C:127 45.0 0.225 80.1 40.3 NA NA NA
2fe4 1 Q9NRW1 83.95 4e-97 X-RAY
 2006-07-04 LYS A:116 A:127 53.0 0.265 73.2 33.3 53.0 0.265 0.0 NO3
GDP
HOH
 9.998
3.097
2.685
 NZ
NZ
NZ
 O1
O4'
O
2ffq 1 Q9NRW1 83.95 4e-97 X-RAY
 2006-07-04 LYS A:116 A:127 46.0 0.23 78.9 37.4 46.0 0.23 0.0 GSP
HOH
 3.182
2.862
 NZ
NZ
 O4'
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9h0n0-f1 1 Q9H0N0 100.0 0.0 ARG A:127 A:127 66.0 0.293 69.4 37.4
af-q53s08-f1 1 Q53S08 98.82 0.0 LYS A:127 A:127 41.0 0.205 68.4 35.1
af-p20340-f1 1 P20340 89.9 2e-136 LYS A:127 A:127 46.0 0.23 73.0 37.0
af-q9nrw1-f1 1 Q9NRW1 82.21 2e-126 LYS A:127 A:127 46.0 0.23 72.2 37.0