Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 130738163 . G A CCDS46408.1:NM_032144.2:c.475Gct>Act_NP_115520.2:p.159A>T Homo sapiens RAB6C, member RAS oncogene family (RAB6C), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4dkx 1 P20340 90.87 4e-136 X-RAY
 2012-10-17 ALA A:159 A:159 70.0 0.609 T -82.6 -18.0 70.0 0.609 0.0 GDP
HOH
 5.109
3.920
 N
O
 O6
O
ALA B:159 B:159 75.0 0.652 T -85.2 -17.0 NA NA NA
3bbp 1 P20340 89.32 3e-132 X-RAY
 2008-02-05 ALA A:162 A:159 69.0 0.6 T -87.4 -10.6 69.0 0.6 0.0 GTP
 5.129
 N
 O6
ALA B:162 B:159 71.0 0.617 T -88.1 -10.7 71.0 0.617 0.0 GTP
 5.128
 N
 O6
ALA C:162 C:159 70.0 0.609 T -88.1 -10.4 NA NA NA
5lef 1 P20340 88.48 3e-120 X-RAY
 2017-11-15 ALA A:155 A:159 71.0 0.617 T -81.2 -15.4 71.0 0.617 0.0 GTP
SO4
HOH
 4.524
4.999
2.902
 H
O
HB2
 O6
O3
O
ALA B:155 B:159 75.0 0.652 T -83.2 -22.2 75.0 0.652 0.0 GTP
SO4
SO4
HOH
 4.567
6.053
6.446
4.396
 H
HA
O
HA
 O6
O1
O3
O
3cwz 1 P20340 89.36 1e-119 X-RAY
 2008-11-18 ALA A:152 A:159 68.0 0.591 T -94.6 -23.8 68.0 0.591 0.0 GTP
HOH
 5.532
8.518
 N
N
 O6
O
1yzq 1 P20340 91.18 5e-110 X-RAY
 2005-07-26 ALA A:152 A:159 71.0 0.617 T -83.6 -25.3 71.0 0.617 0.0 GNP
HOH
 5.272
2.969
 N
O
 O6
O
2y8e 1 O18334 86.36 1e-109 X-RAY
 2011-07-06 ALA A:160 A:158 70.0 0.609 T -80.0 -18.6 70.0 0.609 0.0 GNP
HOH
 5.154
2.834
 N
O
 O6
O
ALA B:160 B:158 75.0 0.652 T -87.5 -17.9 NA NA NA
2gil 1 P20340 89.51 3e-102 X-RAY
 2006-06-27 ALA A:147 A:159 46.0 0.4 T -84.4 -15.6 46.0 0.4 0.0 GTP
HOH
 5.198
3.219
 N
O
 O6
O
ALA B:147 B:159 70.0 0.609 T -89.8 -12.2 NA NA NA
ALA C:147 C:159 70.0 0.609 T -82.0 -22.1 NA NA NA
ALA D:147 D:159 70.0 0.609 T -84.3 -11.3 NA NA NA
2e9s 1 Q9NRW1 83.95 4e-97 X-RAY
 2008-01-29 THR A:148 A:159 88.0 0.629 T -92.8 -25.6 88.0 0.629 0.0 GDP
HOH
 5.378
2.570
 N
O
 O6
O
THR B:148 B:159 81.0 0.579 T -92.8 -23.6 NA NA NA
THR C:148 C:159 83.0 0.593 T -92.0 -20.9 NA NA NA
2fe4 1 Q9NRW1 83.95 4e-97 X-RAY
 2006-07-04 THR A:148 A:159 84.0 0.6 T -92.9 -20.8 84.0 0.6 0.0 GDP
HOH
 5.282
2.679
 N
OG1
 O6
O
2ffq 1 Q9NRW1 83.95 4e-97 X-RAY
 2006-07-04 THR A:148 A:159 87.0 0.621 T -89.7 -23.3 87.0 0.621 0.0 GSP
HOH
 5.378
2.885
 N
OG1
 O6
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9h0n0-f1 1 Q9H0N0 100.0 0.0 ALA A:159 A:159 74.0 0.643 T -101.0 -6.0
af-q53s08-f1 1 Q53S08 98.82 0.0 ALA A:159 A:159 66.0 0.574 T -107.0 -3.4
af-p20340-f1 1 P20340 89.9 2e-136 ALA A:159 A:159 74.0 0.643 T -79.9 -10.1
af-q9nrw1-f1 1 Q9NRW1 82.21 2e-126 THR A:159 A:159 92.0 0.657 T -88.2 -14.3