Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 130738173 . A C CCDS46408.1:NM_032144.2:c.485aAt>aCt_NP_115520.2:p.162N>T Homo sapiens RAB6C, member RAS oncogene family (RAB6C), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4dkx 1 P20340 90.87 4e-136 X-RAY
 2012-10-17 ASN A:162 A:162 17.0 0.106 S 72.8 14.0 17.0 0.106 0.0 GDP
HOH
 9.538
3.075
 N
N
 O6
O
ASN B:162 B:162 34.0 0.212 T 67.0 11.3 NA NA NA
3bbp 1 P20340 89.32 3e-132 X-RAY
 2008-02-05 ASN A:165 A:162 42.0 0.263 T 60.7 12.6 42.0 0.263 0.0 GTP
 9.670
 N
 O6
ASN B:165 B:162 42.0 0.263 T 61.2 12.4 42.0 0.263 0.0 GTP
 9.665
 N
 O6
ASN C:165 C:162 42.0 0.263 T 60.6 12.9 NA NA NA
5lef 1 P20340 88.48 3e-120 X-RAY
 2017-11-15 ASN A:158 A:162 25.0 0.156 S 65.5 14.3 25.0 0.156 0.0 GTP
GOL
HOH
 9.372
5.748
2.469
 HB2
HD21
H
 O6
O2
O
ASN B:158 B:162 39.0 0.244 T 61.9 12.7 39.0 0.244 0.0 GTP
SO4
HOH
 9.373
2.277
2.493
 HB2
H
HD21
 O6
O2
O
3cwz 1 P20340 89.36 1e-119 X-RAY
 2008-11-18 ASN A:155 A:162 94.0 0.588 T 35.2 58.3 94.0 0.588 0.0
1yzq 1 P20340 91.18 5e-110 X-RAY
 2005-07-26 ASN A:155 A:162 33.0 0.206 T 65.8 9.6 33.0 0.206 0.0 GNP
HOH
 9.549
2.640
 N
ND2
 O6
O
2y8e 1 O18334 86.36 1e-109 X-RAY
 2011-07-06 ASN A:163 A:161 45.0 0.281 S 66.1 13.5 45.0 0.281 0.0 GNP
HOH
 9.604
3.515
 N
ND2
 O6
O
ASN B:163 B:161 20.0 0.125 T 60.4 15.9 NA NA NA
2gil 1 P20340 89.51 3e-102 X-RAY
 2006-06-27 ASN A:150 A:162 78.0 0.487 S 62.3 8.2 78.0 0.487 0.0 GTP
HOH
 9.541
3.322
 N
CA
 O6
O
ASN B:150 B:162 42.0 0.263 S 72.2 0.9 NA NA NA
ASN C:150 C:162 35.0 0.219 S 65.1 11.2 NA NA NA
ASN D:150 D:162 40.0 0.25 S 72.0 -0.1 NA NA NA
2e9s 1 Q9NRW1 83.95 4e-97 X-RAY
 2008-01-29 ASN A:151 A:162 57.0 0.356 T 59.6 9.1 57.0 0.356 0.0 GDP
HOH
 9.580
2.726
 N
OD1
 O6
O
ASN B:151 B:162 50.0 0.312 T 60.6 13.5 NA NA NA
ASN C:151 C:162 35.0 0.219 T 59.3 12.0 NA NA NA
2fe4 1 Q9NRW1 83.95 4e-97 X-RAY
 2006-07-04 ASN A:151 A:162 54.0 0.338 T 57.5 9.5 54.0 0.338 0.0 GDP
HOH
 9.504
3.580
 N
ND2
 O6
O
2ffq 1 Q9NRW1 83.95 4e-97 X-RAY
 2006-07-04 ASN A:151 A:162 48.0 0.3 T 61.8 9.5 48.0 0.3 0.0 GSP
HOH
 9.546
2.478
 N
OD1
 O6
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9h0n0-f1 1 Q9H0N0 100.0 0.0 ASN A:162 A:162 35.0 0.219 T 57.4 3.9
af-q53s08-f1 1 Q53S08 98.82 0.0 ASN A:162 A:162 35.0 0.219 T 56.8 4.5
af-p20340-f1 1 P20340 89.9 2e-136 ASN A:162 A:162 46.0 0.287 T 56.2 4.5
af-q9nrw1-f1 1 Q9NRW1 82.21 2e-126 ASN A:162 A:162 42.0 0.263 T 56.5 4.3