Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr2 | 187523880 | . | C | A | CCDS2292.1:NM_002210.4:c.1835aCg>aAg_NP_002201.1:p.612T>K | Homo sapiens integrin subunit alpha V (ITGAV), transcript variant 1, mRNA. |
|---|---|---|---|---|---|---|---|
|
|
|
|
|
PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 6uja | 1 | P06756 | 99.9 | 0.0 |
EM |
2020-02-05 | THR | A:582 | A:582 | 54.0 | 0.386 | S | -123.5 | 151.4 | 54.0 | 0.386 | 0.0 | ||||||
| 6ujb | 1 | P06756 | 99.9 | 0.0 |
EM |
2020-02-05 | THR | A:582 | A:582 | 55.0 | 0.393 | S | -121.1 | 148.9 | 55.0 | 0.393 | 0.0 | ||||||
| 6ujc | 1 | P06756 | 99.9 | 0.0 |
EM |
2020-02-05 | THR | A:582 | A:582 | 51.0 | 0.364 | S | -123.1 | 150.4 | 51.0 | 0.364 | 0.0 | ||||||
| 3ije | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2009-09-29 | THR | A:582 | A:582 | 34.0 | 0.243 | S | -138.7 | 118.7 | 34.0 | 0.243 | 0.0 |
NAG NAG |
6.665 9.054 |
C O |
O6 O5 |
||
| 6msl | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2019-10-23 | THR | A:582 | A:582 | 37.0 | 0.264 | S | -148.7 | 137.3 | 37.0 | 0.264 | 0.0 |
NAG NAG |
5.651 7.950 |
O O |
O3 O7 |
||
| 6msu | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2019-10-23 | THR | A:582 | A:582 | 39.0 | 0.279 | S | -150.3 | 142.6 | 39.0 | 0.279 | 0.0 |
NAG NAG |
5.621 8.527 |
O O |
O3 O7 |
||
| 6djp | 1 | P06756 | 99.9 | 0.0 |
EM |
2018-07-25 | THR | A:582 | A:582 | 39.0 | NA | S | -106.4 | 126.1 | 39.0 | NA | NA |
NAG NAG |
5.872 9.017 |
O O |
O6 C6 |
||
| 4o02 | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2014-04-02 | THR | A:582 | A:582 | 36.0 | NA | S | -147.3 | 81.2 | 36.0 | NA | NA |
NAG |
6.719 |
O |
O7 |
||
| 4g1e | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2012-12-12 | THR | A:582 | A:582 | 36.0 | 0.257 | -146.5 | 132.7 | 36.0 | 0.257 | 0.0 |
NAG NAG |
5.738 4.694 |
O O |
C6 C8 |
|||
| 4g1m | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2012-12-12 | THR | A:582 | A:582 | 27.0 | 0.193 | S | -113.5 | 130.9 | 27.0 | 0.193 | 0.0 |
NAG NAG |
5.634 8.723 |
O O |
O6 C1 |
||
| 4mmx | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2014-03-26 | THR | A:582 | A:582 | 45.0 | 0.321 | -147.2 | 146.7 | 45.0 | 0.321 | 0.0 |
NAG NAG |
5.009 8.037 |
O O |
O6 O5 |
|||
| 4mmy | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2014-03-26 | THR | A:582 | A:582 | 47.0 | 0.336 | -177.6 | 134.9 | 47.0 | 0.336 | 0.0 |
NAG NAG |
5.358 8.224 |
O O |
O6 O7 |
|||
| 4mmz | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2014-03-26 | THR | A:582 | A:582 | 55.0 | 0.393 | -177.2 | 137.9 | 55.0 | 0.393 | 0.0 |
NAG |
5.911 |
C |
O6 |
|||
| 6avq | 1 | P06756 | 100.0 | 0.0 |
EM |
2017-11-01 | THR | A:582 | A:582 | 43.0 | NA | -100.0 | 123.4 | 43.0 | NA | NA | |||||||
| 6avr | 1 | P06756 | 100.0 | 0.0 |
EM |
2017-11-01 | THR | A:582 | A:582 | 43.0 | NA | -100.1 | 123.3 | 43.0 | NA | NA | |||||||
| 6avu | 1 | P06756 | 100.0 | 0.0 |
EM |
2017-11-01 | THR | A:582 | A:582 | 42.0 | NA | -100.7 | 123.6 | 42.0 | NA | NA | |||||||
| 1jv2 | 1 | 14743192 | 99.9 | 0.0 |
X-RAY |
2001-10-17 | THR | A:582 | A:582 | 43.0 | 0.307 | -139.5 | 119.0 | 43.0 | 0.307 | 0.0 |
NAG NAG |
7.420 9.307 |
C O |
O6 C4 |
|||
| 1l5g | 1 | 14743192 | 99.9 | 0.0 |
X-RAY |
2002-04-17 | THR | A:582 | A:582 | 40.0 | 0.286 | -126.4 | 121.1 | 40.0 | 0.286 | 0.0 |
NAG NAG |
7.294 8.476 |
O O |
C6 O7 |
|||
| 1m1x | 1 | 14743192 | 99.9 | 0.0 |
X-RAY |
2002-08-14 | THR | A:582 | A:582 | 41.0 | 0.293 | -130.0 | 117.6 | 41.0 | 0.293 | 0.0 |
NAG NAG |
7.642 9.203 |
O O |
C6 C4 |
|||
| 1u8c | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2004-12-28 | THR | A:582 | A:582 | 43.0 | 0.307 | -160.2 | 125.9 | 43.0 | 0.307 | 0.0 |
NAG NAG |
6.956 8.288 |
O O |
C6 C4 |
|||
| 6mk0 | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2019-09-25 | THR | A:582 | A:582 | 46.0 | 0.329 | -150.9 | 139.8 | 46.0 | 0.329 | 0.0 |
NAG |
6.125 |
C |
O6 |
|||
| 6naj | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2019-12-11 | THR | A:582 | A:582 | 44.0 | 0.314 | -146.1 | 139.5 | 44.0 | 0.314 | 0.0 |
NAG |
6.080 |
O |
O6 |
|||
| 4um8 | 1 | P06756 | 99.66 | 0.0 |
X-RAY |
2014-11-12 | THR | A:582 | A:582 | 37.0 | 0.264 | S | -67.0 | 114.8 | 37.0 | 0.264 | 0.0 |
NAG NAG HOH |
6.190 5.162 8.708 |
C O CG2 |
O6 C8 O |
||
| THR | C:582 | C:582 | 41.0 | 0.293 | S | -62.5 | 115.5 | NA | NA | NA | |||||||||||||
| 4um9 | 1 | P06756 | 99.66 | 0.0 |
X-RAY |
2014-11-12 | THR | A:582 | A:582 | 38.0 | 0.271 | S | -97.6 | 127.9 | NA | NA | NA | ||||||
| THR | C:582 | C:582 | 51.0 | 0.364 | S | -98.0 | 126.9 | 51.0 | 0.364 | 0.0 |
NAG NAG |
5.377 5.115 |
C O |
O6 C8 |
|||||||||
| 5ner | 5 | P06756 | 99.83 | 0.0 |
EM |
2017-06-21 | THR | E:582 | A:582 | 40.0 | 0.286 | -104.2 | 114.7 | 40.0 | 0.286 | 0.0 |
NAG NAG |
3.967 4.427 |
O O |
O6 C8 |
|||
| 5net | 5 | P06756 | 99.83 | 0.0 |
EM |
2017-06-21 | THR | E:582 | A:582 | 41.0 | 0.293 | -104.2 | 114.7 | 41.0 | 0.293 | 0.0 |
NAG NAG |
3.966 4.428 |
O O |
O6 C8 |
|||
| 5ffg | 1 | P06756 | 99.5 | 0.0 |
X-RAY |
2017-01-25 | THR | A:583 | A:583 | 58.0 | 0.414 | S | -102.2 | 129.2 | 58.0 | 0.414 | 0.0 |
NAG HOH |
4.592 9.549 |
C CG2 |
O6 O |
||
| 5ffo | 1 | P06756 | 99.5 | 0.0 |
X-RAY |
2017-01-25 | THR | A:583 | A:583 | 68.0 | 0.486 | S | -127.7 | 43.1 | 68.0 | 0.486 | 0.0 |
NAG NAG |
7.930 8.224 |
C N |
O6 C8 |
||
| THR | E:583 | E:583 | 89.0 | 0.636 | S | -136.0 | 48.4 | 89.0 | 0.636 | 0.0 |
NAG NAG |
7.306 8.169 |
C N |
O6 C8 |
|||||||||
| 6om1 | 1 | P06756 | 99.33 | 0.0 |
X-RAY |
2019-12-11 | THR | A:583 | A:583 | 37.0 | 0.264 | S | -148.4 | 110.0 | 37.0 | 0.264 | 0.0 |
NAG HOH |
6.169 5.388 |
C HG1 |
O6 O |
||
| THR | C:583 | C:583 | 33.0 | 0.236 | -98.0 | 121.6 | NA | NA | NA | ||||||||||||||
| THR | E:583 | E:583 | 36.0 | 0.257 | S | -60.7 | 123.4 | NA | NA | NA | |||||||||||||
| THR | G:583 | G:583 | 32.0 | 0.229 | -64.1 | 126.1 | NA | NA | NA | ||||||||||||||
| 6om2 | 1 | P06756 | 99.33 | 0.0 |
X-RAY |
2019-12-11 | THR | A:583 | A:583 | 46.0 | 0.329 | S | -85.8 | 152.4 | 46.0 | 0.329 | 0.0 |
NAG HOH |
5.386 2.167 |
C HG1 |
O6 O |
||
| THR | C:583 | C:583 | 36.0 | 0.257 | -116.5 | 123.9 | 36.0 | 0.257 | 0.0 |
NAG NAG HOH |
8.399 8.451 2.364 |
O O HG22 |
C1 O7 O |
||||||||||
| 5nem | 5 | P06756 | 99.16 | 0.0 |
EM |
2017-06-21 | THR | E:578 | A:582 | 41.0 | 0.293 | -104.2 | 114.7 | 41.0 | 0.293 | 0.0 |
NAG NAG |
3.966 4.427 |
O O |
O6 C8 |
|||
| 5neu | 5 | P06756 | 99.16 | 0.0 |
EM |
2017-06-21 | THR | E:578 | A:582 | 52.0 | 0.371 | -136.4 | 99.6 | 52.0 | 0.371 | 0.0 | |||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p06756-f1 | 1 | P06756 | 99.9 | 0.0 | THR | A:612 | A:612 | 32.0 | 0.229 | S | -92.6 | 118.0 | |