Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 219266858 . C A CCDS56166.1:NM_001206878.1:c.238Cct>Act_NP_001193807.1:p.80P>T Homo sapiens CTD small phosphatase 1 (CTDSP1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1ta0 1 Q9GZU7 99.46 1e-135 X-RAY
 2004-08-31 PRO A:6 A:81 94.0 0.648 -82.3 -170.8 94.0 0.648 0.0 HOH
 3.435
 CB
 O
1t9z 1 Q9GZU7 98.39 3e-135 X-RAY
 2004-08-31 PRO A:6 A:81 96.0 0.662 -80.4 -171.9 96.0 0.662 0.0 HOH
 3.277
 CB
 O
4ygy 1 Q9GZU7 99.46 1e-134 X-RAY
 2015-09-16 PRO A:9 A:81 104.0 0.717 -76.5 172.9 104.0 0.717 0.0 HOH
 8.071
 O
 O
PRO B:9 B:81 102.0 0.703 -60.0 172.9 NA NA NA
4yh1 1 Q9GZU7 99.46 1e-134 X-RAY
 2015-09-16 PRO A:9 A:81 104.0 0.717 -80.2 -178.9 104.0 0.717 0.0 HOH
 3.372
 O
 O
PRO B:9 B:81 101.0 0.697 -59.0 172.1 NA NA NA
3pgl 1 Q9GZU7 100.0 4e-131 X-RAY
 2011-03-09 PRO A:5 A:81 99.0 0.683 -66.5 169.5 99.0 0.683 0.0 HOH
 4.078
 CA
 O
PRO B:5 B:81 102.0 0.703 -81.2 175.2 NA NA NA
6du2 1 A0A1S2ZIN9 99.44 1e-130 X-RAY
 2018-09-26 PRO A:5 A:81 98.0 0.676 -69.4 177.2 98.0 0.676 0.0
PRO B:5 B:81 102.0 0.703 -78.8 -177.0 NA NA NA
6du3 1 Q9GZU7 99.44 1e-130 X-RAY
 2018-09-26 PRO A:5 A:81 100.0 0.69 -63.2 177.7 100.0 0.69 0.0
PRO B:5 B:81 99.0 0.683 -82.0 175.1 NA NA NA
2ghq 1 Q9GZU7 99.44 2e-130 X-RAY
 2006-12-05 PRO A:6 A:81 101.0 0.697 -83.3 175.8 101.0 0.697 0.0 HOH
 6.892
 CD
 O
PRO B:6 B:81 99.0 0.683 -76.1 179.3 NA NA NA
2ght 1 Q9GZU7 99.44 2e-130 X-RAY
 2006-12-05 PRO A:6 A:81 99.0 0.683 -83.3 173.5 99.0 0.683 0.0 HOH
 3.642
 O
 O
PRO B:6 B:81 94.0 0.648 -76.8 -177.8 NA NA NA
3l0y 1 Q9GZU7 99.44 3e-130 X-RAY
 2010-03-23 PRO A:9 A:81 101.0 0.697 -65.7 173.0 101.0 0.697 0.0 HOH
 3.323
 CB
 O
PRO B:9 B:81 102.0 0.703 -84.1 173.6 NA NA NA
3l0b 1 Q9GZU7 99.44 3e-130 X-RAY
 2010-03-23 PRO A:9 A:81 99.0 0.683 -68.5 166.9 99.0 0.683 0.0 HOH
 5.923
 O
 O
PRO B:9 B:81 104.0 0.717 -76.0 171.1 NA NA NA
3l0c 1 Q9GZU7 99.44 3e-130 X-RAY
 2010-03-23 PRO A:9 A:81 96.0 0.662 -63.8 171.2 96.0 0.662 0.0 HOH
 6.407
 CD
 O
PRO B:9 B:81 101.0 0.697 -84.3 178.8 NA NA NA
2hhl 1 O15194 82.29 3e-107 X-RAY
 2006-08-29 PRO A:19 A:19 97.0 0.669 -73.7 170.6 97.0 0.669 0.0 HOH
 3.292
 CB
 O
PRO B:19 B:19 98.0 0.676 -68.5 169.8 NA NA NA
PRO C:19 C:19 88.0 0.607 -63.9 174.1 NA NA NA
PRO D:19 D:19 93.0 0.641 -74.2 176.1 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9gzu7-f1 1 Q9GZU7 100.0 0.0 PRO A:81 A:81 99.0 0.683 -67.2 175.2