Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 219266894 . G A CCDS56166.1:NM_001206878.1:c.274Gtg>Atg_NP_001193807.1:p.92V>M Homo sapiens CTD small phosphatase 1 (CTDSP1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1ta0 1 Q9GZU7 99.46 1e-135 X-RAY
 2004-08-31 VAL A:18 A:93 0.0 0.0 E -112.6 118.9 0.0 0.0 0.0 HOH
 6.633
 CG2
 O
1t9z 1 Q9GZU7 98.39 3e-135 X-RAY
 2004-08-31 VAL A:18 A:93 0.0 0.0 E -113.3 118.1 0.0 0.0 0.0 HOH
 6.569
 N
 O
4ygy 1 Q9GZU7 99.46 1e-134 X-RAY
 2015-09-16 VAL A:21 A:93 0.0 0.0 E -107.3 132.8 0.0 0.0 0.0 HOH
 6.774
 N
 O
VAL B:21 B:93 0.0 0.0 E -124.9 125.9 NA NA NA
4yh1 1 Q9GZU7 99.46 1e-134 X-RAY
 2015-09-16 VAL A:21 A:93 0.0 0.0 E -101.3 120.8 0.0 0.0 0.0 HOH
 6.575
 CG2
 O
VAL B:21 B:93 0.0 0.0 E -116.8 126.3 NA NA NA
3pgl 1 Q9GZU7 100.0 4e-131 X-RAY
 2011-03-09 VAL A:17 A:93 0.0 0.0 E -107.5 122.3 0.0 0.0 0.0 HOH
 6.492
 N
 O
VAL B:17 B:93 0.0 0.0 E -110.6 125.3 NA NA NA
6du2 1 A0A1S2ZIN9 99.44 1e-130 X-RAY
 2018-09-26 VAL A:17 A:93 0.0 0.0 E -125.3 122.6 0.0 0.0 0.0 HOH
 9.046
 N
 O
VAL B:17 B:93 0.0 0.0 E -107.2 120.3 NA NA NA
6du3 1 Q9GZU7 99.44 1e-130 X-RAY
 2018-09-26 VAL A:17 A:93 0.0 0.0 E -125.0 119.0 0.0 0.0 0.0 HOH
 9.102
 N
 O
VAL B:17 B:93 0.0 0.0 E -109.3 116.2 NA NA NA
2ghq 1 Q9GZU7 99.44 2e-130 X-RAY
 2006-12-05 VAL A:18 A:93 0.0 0.0 E -120.6 120.7 0.0 0.0 0.0 HOH
 6.567
 N
 O
VAL B:18 B:93 0.0 0.0 E -117.8 128.9 NA NA NA
2ght 1 Q9GZU7 99.44 2e-130 X-RAY
 2006-12-05 VAL A:18 A:93 0.0 0.0 E -118.6 123.3 0.0 0.0 0.0 HOH
 6.533
 N
 O
VAL B:18 B:93 0.0 0.0 E -118.0 124.8 NA NA NA
3l0y 1 Q9GZU7 99.44 3e-130 X-RAY
 2010-03-23 VAL A:21 A:93 0.0 0.0 E -117.9 123.6 0.0 0.0 0.0 HOH
 6.390
 N
 O
VAL B:21 B:93 0.0 0.0 E -106.9 117.8 NA NA NA
3l0b 1 Q9GZU7 99.44 3e-130 X-RAY
 2010-03-23 VAL A:21 A:93 0.0 0.0 E -119.5 123.7 0.0 0.0 0.0 HOH
 6.355
 N
 O
VAL B:21 B:93 0.0 0.0 E -111.2 118.9 NA NA NA
3l0c 1 Q9GZU7 99.44 3e-130 X-RAY
 2010-03-23 VAL A:21 A:93 0.0 0.0 E -112.4 116.2 0.0 0.0 0.0 HOH
 7.270
 CG2
 O
VAL B:21 B:93 0.0 0.0 E -107.5 120.2 NA NA NA
2hhl 1 O15194 82.29 3e-107 X-RAY
 2006-08-29 VAL A:31 A:31 0.0 0.0 E -114.5 117.0 0.0 0.0 0.0 HOH
 6.916
 CG2
 O
VAL B:31 B:31 0.0 0.0 E -111.7 116.1 NA NA NA
VAL C:31 C:31 0.0 0.0 E -107.6 110.3 NA NA NA
VAL D:31 D:31 0.0 0.0 E -108.2 114.8 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9gzu7-f1 1 Q9GZU7 100.0 0.0 VAL A:93 A:93 0.0 0.0 E -115.6 115.0