Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 219267118 . T A CCDS56166.1:NM_001206878.1:c.365gTg>gAg_NP_001193807.1:p.122V>E Homo sapiens CTD small phosphatase 1 (CTDSP1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1ta0 1 Q9GZU7 99.46 1e-135 X-RAY
 2004-08-31 VAL A:48 A:123 81.0 0.523 E -119.2 130.6 81.0 0.523 0.0 CIT
HOH
 8.703
3.823
 O
CA
 O3
O
1t9z 1 Q9GZU7 98.39 3e-135 X-RAY
 2004-08-31 VAL A:48 A:123 81.0 0.523 E -118.3 133.0 81.0 0.523 0.0 CIT
HOH
 9.176
3.754
 O
CG1
 O3
O
4ygy 1 Q9GZU7 99.46 1e-134 X-RAY
 2015-09-16 VAL A:51 A:123 82.0 0.529 E -103.1 130.6 82.0 0.529 0.0 HOH
 7.031
 O
 O
VAL B:51 B:123 83.0 0.535 E -122.1 124.9 NA NA NA
4yh1 1 Q9GZU7 99.46 1e-134 X-RAY
 2015-09-16 VAL A:51 A:123 80.0 0.516 E -93.7 132.4 80.0 0.516 0.0 HOH
 5.045
 N
 O
VAL B:51 B:123 79.0 0.51 E -110.9 129.1 NA NA NA
3pgl 1 Q9GZU7 100.0 4e-131 X-RAY
 2011-03-09 VAL A:47 A:123 80.0 0.516 E -105.2 124.5 80.0 0.516 0.0 RZX
HOH
 7.437
3.945
 O
CA
 C24
O
VAL B:47 B:123 83.0 0.535 E -102.5 130.9 NA NA NA
6du2 1 A0A1S2ZIN9 99.44 1e-130 X-RAY
 2018-09-26 VAL A:47 A:123 82.0 0.529 E -96.2 125.1 82.0 0.529 0.0
VAL B:47 B:123 81.0 0.523 E -98.2 128.1 NA NA NA
6du3 1 Q9GZU7 99.44 1e-130 X-RAY
 2018-09-26 VAL A:47 A:123 80.0 0.516 E -116.2 122.8 80.0 0.516 0.0
VAL B:47 B:123 82.0 0.529 E -95.6 138.0 NA NA NA
2ghq 1 Q9GZU7 99.44 2e-130 X-RAY
 2006-12-05 VAL A:48 A:123 80.0 0.516 E -100.5 131.3 80.0 0.516 0.0 HOH
 6.835
 CG1
 O
VAL B:48 B:123 77.0 0.497 E -99.8 127.7 NA NA NA
2ght 1 Q9GZU7 99.44 2e-130 X-RAY
 2006-12-05 VAL A:48 A:123 82.0 0.529 E -97.9 134.6 82.0 0.529 0.0 HOH
 3.611
 CB
 O
VAL B:48 B:123 74.0 0.477 E -121.2 122.9 NA NA NA
3l0y 1 Q9GZU7 99.44 3e-130 X-RAY
 2010-03-23 VAL A:51 A:123 83.0 0.535 E -111.6 131.5 83.0 0.535 0.0 HOH
 3.582
 CB
 O
VAL B:51 B:123 83.0 0.535 E -97.1 131.6 NA NA NA
3l0b 1 Q9GZU7 99.44 3e-130 X-RAY
 2010-03-23 VAL A:51 A:123 82.0 0.529 E -108.7 134.4 82.0 0.529 0.0 1PG
HOH
 8.986
3.713
 O
CB
 C8
O
VAL B:51 B:123 82.0 0.529 E -96.9 126.2 NA NA NA
3l0c 1 Q9GZU7 99.44 3e-130 X-RAY
 2010-03-23 VAL A:51 A:123 79.0 0.51 E -114.9 127.2 79.0 0.51 0.0 HOH
 7.812
 CG1
 O
VAL B:51 B:123 84.0 0.542 E -94.3 133.8 NA NA NA
2hhl 1 O15194 82.29 3e-107 X-RAY
 2006-08-29 THR A:61 A:61 73.0 0.521 E -117.3 139.5 73.0 0.521 0.0 HOH
 7.219
 O
 O
THR B:61 B:61 77.0 0.55 E -116.6 134.2 NA NA NA
THR C:61 C:61 82.0 0.586 E -99.6 125.1 NA NA NA
THR D:61 D:61 84.0 0.6 E -100.0 128.2 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9gzu7-f1 1 Q9GZU7 100.0 0.0 VAL A:123 A:123 84.0 0.542 E -110.7 128.8