Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 219267762 . A C CCDS56166.1:NM_001206878.1:c.380tAc>tCc_NP_001193807.1:p.127Y>S Homo sapiens CTD small phosphatase 1 (CTDSP1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1ta0 1 Q9GZU7 99.46 1e-135 X-RAY
 2004-08-31 TYR A:53 A:128 34.0 0.148 E -91.1 116.5 34.0 0.148 0.0 CIT
HOH
 5.781
3.119
 N
O
 O1
O
1t9z 1 Q9GZU7 98.39 3e-135 X-RAY
 2004-08-31 TYR A:53 A:128 29.0 0.126 E -97.5 113.0 29.0 0.126 0.0 CIT
HOH
 6.233
2.827
 O
O
 O1
O
4ygy 1 Q9GZU7 99.46 1e-134 X-RAY
 2015-09-16 TYR A:56 A:128 36.0 0.157 E -100.6 122.7 36.0 0.157 0.0 HOH
 2.933
 O
 O
TYR B:56 B:128 48.0 0.209 E -89.1 121.0 NA NA NA
4yh1 1 Q9GZU7 99.46 1e-134 X-RAY
 2015-09-16 TYR A:56 A:128 33.0 0.143 E -96.4 125.3 33.0 0.143 0.0 HOH
 2.752
 OH
 O
TYR B:56 B:128 48.0 0.209 E -92.7 116.8 NA NA NA
3pgl 1 Q9GZU7 100.0 4e-131 X-RAY
 2011-03-09 TYR A:52 A:128 50.0 0.217 E -93.4 110.1 50.0 0.217 0.0 RZX
HOH
 7.499
2.759
 O
O
 O18
O
TYR B:52 B:128 29.0 0.126 E -89.9 126.3 NA NA NA
6du2 1 A0A1S2ZIN9 99.44 1e-130 X-RAY
 2018-09-26 TYR A:52 A:128 47.0 0.204 E -97.9 117.2 47.0 0.204 0.0
TYR B:52 B:128 38.0 0.165 E -106.3 126.4 NA NA NA
6du3 1 Q9GZU7 99.44 1e-130 X-RAY
 2018-09-26 TYR A:52 A:128 45.0 0.196 E -93.0 123.8 45.0 0.196 0.0
TYR B:52 B:128 40.0 0.174 E -97.7 122.8 NA NA NA
2ghq 1 Q9GZU7 99.44 2e-130 X-RAY
 2006-12-05 TYR A:53 A:128 33.0 0.143 E -96.7 124.4 33.0 0.143 0.0 HOH
 3.048
 O
 O
TYR B:53 B:128 51.0 0.222 E -89.9 123.7 NA NA NA
2ght 1 Q9GZU7 99.44 2e-130 X-RAY
 2006-12-05 TYR A:53 A:128 31.0 0.135 E -95.7 123.5 31.0 0.135 0.0 HOH
 2.580
 OH
 O
TYR B:53 B:128 46.0 0.2 E -95.3 121.7 NA NA NA
3l0y 1 Q9GZU7 99.44 3e-130 X-RAY
 2010-03-23 TYR A:56 A:128 47.0 0.204 E -97.5 112.4 47.0 0.204 0.0 HOH
 2.677
 O
 O
TYR B:56 B:128 30.0 0.13 E -96.6 126.9 NA NA NA
3l0b 1 Q9GZU7 99.44 3e-130 X-RAY
 2010-03-23 TYR A:56 A:128 50.0 0.217 E -91.4 119.8 50.0 0.217 0.0 1PG
HOH
 7.107
4.327
 O
CE1
 C4
O
TYR B:56 B:128 32.0 0.139 E -99.7 126.5 NA NA NA
3l0c 1 Q9GZU7 99.44 3e-130 X-RAY
 2010-03-23 TYR A:56 A:128 51.0 0.222 E -89.9 117.2 51.0 0.222 0.0 HOH
 4.541
 CD2
 O
TYR B:56 B:128 31.0 0.135 E -95.2 126.6 NA NA NA
2hhl 1 O15194 82.29 3e-107 X-RAY
 2006-08-29 TYR A:66 A:66 35.0 0.152 E -102.3 121.2 35.0 0.152 0.0 KEG
HOH
 7.468
2.876
 O
OH
 O8
O
TYR B:66 B:66 37.0 0.161 E -103.6 123.3 NA NA NA
TYR C:66 C:66 44.0 0.191 E -95.6 126.3 NA NA NA
TYR D:66 D:66 32.0 0.139 E -91.5 124.0 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9gzu7-f1 1 Q9GZU7 100.0 0.0 TYR A:128 A:128 46.0 0.2 E -94.0 121.6