Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 219267959 . C A CCDS56166.1:NM_001206878.1:c.473gCa>gAa_NP_001193807.1:p.158A>E Homo sapiens CTD small phosphatase 1 (CTDSP1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1ta0 1 Q9GZU7 99.46 1e-135 X-RAY
 2004-08-31 ALA A:84 A:159 0.0 0.0 H -59.9 -40.2 0.0 0.0 0.0 CIT
HOH
 6.385
6.040
 N
N
 C4
O
1t9z 1 Q9GZU7 98.39 3e-135 X-RAY
 2004-08-31 ALA A:84 A:159 0.0 0.0 H -60.8 -34.5 0.0 0.0 0.0 CIT
HOH
 6.509
6.224
 N
N
 C4
O
4ygy 1 Q9GZU7 99.46 1e-134 X-RAY
 2015-09-16 ALA A:87 A:159 0.0 0.0 H -74.0 -37.0 0.0 0.0 0.0 HOH
 6.947
 N
 O
ALA B:87 B:159 0.0 0.0 H -77.1 -36.3 NA NA NA
4yh1 1 Q9GZU7 99.46 1e-134 X-RAY
 2015-09-16 ALA A:87 A:159 0.0 0.0 H -69.2 -37.4 0.0 0.0 0.0 HOH
 6.883
 N
 O
ALA B:87 B:159 0.0 0.0 H -67.2 -40.9 NA NA NA
3pgl 1 Q9GZU7 100.0 4e-131 X-RAY
 2011-03-09 ALA A:83 A:159 0.0 0.0 H -72.2 -37.9 0.0 0.0 0.0 RZX
HOH
 6.546
6.930
 N
N
 N13
O
ALA B:83 B:159 0.0 0.0 H -69.4 -46.1 NA NA NA
6du2 1 A0A1S2ZIN9 99.44 1e-130 X-RAY
 2018-09-26 ALA A:83 A:159 0.0 0.0 H -69.9 -48.1 0.0 0.0 0.0 HOH
 9.237
 O
 O
ALA B:83 B:159 0.0 0.0 H -72.2 -38.4 NA NA NA
6du3 1 Q9GZU7 99.44 1e-130 X-RAY
 2018-09-26 ALA A:83 A:159 0.0 0.0 H -70.6 -45.7 0.0 0.0 0.0 HOH
 7.779
 C
 O
ALA B:83 B:159 0.0 0.0 H -67.5 -35.1 NA NA NA
2ghq 1 Q9GZU7 99.44 2e-130 X-RAY
 2006-12-05 ALA A:84 A:159 0.0 0.0 H -67.3 -33.5 0.0 0.0 0.0 HOH
 7.116
 N
 O
ALA B:84 B:159 0.0 0.0 H -58.0 -41.0 NA NA NA
2ght 1 Q9GZU7 99.44 2e-130 X-RAY
 2006-12-05 ALA A:84 A:159 0.0 0.0 H -66.5 -38.4 0.0 0.0 0.0 HOH
 7.161
 N
 O
ALA B:84 B:159 0.0 0.0 H -58.3 -41.6 NA NA NA
3l0y 1 Q9GZU7 99.44 3e-130 X-RAY
 2010-03-23 ALA A:87 A:159 1.0 0.009 H -67.4 -50.6 1.0 0.009 0.0 HOH
 4.473
 CB
 O
ALA B:87 B:159 0.0 0.0 H -77.6 -43.1 NA NA NA
3l0b 1 Q9GZU7 99.44 3e-130 X-RAY
 2010-03-23 ALA A:87 A:159 0.0 0.0 H -75.1 -41.8 0.0 0.0 0.0 1PG
HOH
 6.498
6.117
 N
N
 O4
O
ALA B:87 B:159 0.0 0.0 H -75.4 -36.1 NA NA NA
3l0c 1 Q9GZU7 99.44 3e-130 X-RAY
 2010-03-23 ALA A:87 A:159 0.0 0.0 H -72.4 -38.1 0.0 0.0 0.0 PO4
HOH
 7.048
8.986
 CB
O
 O1
O
ALA B:87 B:159 0.0 0.0 H -78.6 -36.2 NA NA NA
2hhl 1 O15194 82.29 3e-107 X-RAY
 2006-08-29 ALA A:97 A:97 0.0 0.0 H -70.5 -37.9 0.0 0.0 0.0 HOH
 6.493
 C
 O
ALA B:97 B:97 0.0 0.0 H -66.1 -36.1 NA NA NA
ALA C:97 C:97 0.0 0.0 H -65.0 -35.5 NA NA NA
ALA D:97 D:97 0.0 0.0 H -66.4 -38.7 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9gzu7-f1 1 Q9GZU7 100.0 0.0 ALA A:159 A:159 0.0 0.0 H -67.2 -36.9