Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 219268001 . G A CCDS56166.1:NM_001206878.1:c.515cGg>cAg_NP_001193807.1:p.172R>Q Homo sapiens CTD small phosphatase 1 (CTDSP1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1ta0 1 Q9GZU7 99.46 1e-135 X-RAY
 2004-08-31 ARG A:98 A:173 76.0 0.338 E -73.8 -25.6 76.0 0.338 0.0 HOH
 2.472
 NE
 O
1t9z 1 Q9GZU7 98.39 3e-135 X-RAY
 2004-08-31 ARG A:98 A:173 74.0 0.329 E -78.3 -21.0 74.0 0.329 0.0 HOH
 3.008
 O
 O
4ygy 1 Q9GZU7 99.46 1e-134 X-RAY
 2015-09-16 ARG A:101 A:173 78.0 0.347 E -76.9 -19.1 78.0 0.347 0.0 HOH
 4.246
 C
 O
ARG B:101 B:173 89.0 0.396 E -84.9 -20.5 NA NA NA
4yh1 1 Q9GZU7 99.46 1e-134 X-RAY
 2015-09-16 ARG A:101 A:173 63.0 0.28 E -75.7 -23.8 63.0 0.28 0.0 HOH
 4.316
 C
 O
ARG B:101 B:173 88.0 0.391 E -81.1 -21.3 NA NA NA
3pgl 1 Q9GZU7 100.0 4e-131 X-RAY
 2011-03-09 ARG A:97 A:173 81.0 0.36 E -90.3 -16.9 81.0 0.36 0.0 HOH
 4.454
 C
 O
ARG B:97 B:173 68.0 0.302 E -84.7 -21.4 NA NA NA
6du2 1 A0A1S2ZIN9 99.44 1e-130 X-RAY
 2018-09-26 ARG A:97 A:173 93.0 0.413 E -80.6 -21.6 93.0 0.413 0.0 HOH
 4.437
 C
 O
ARG B:97 B:173 78.0 0.347 E -78.7 -26.7 NA NA NA
6du3 1 Q9GZU7 99.44 1e-130 X-RAY
 2018-09-26 ARG A:97 A:173 89.0 0.396 E -83.0 -16.2 89.0 0.396 0.0 HOH
 4.461
 C
 O
ARG B:97 B:173 81.0 0.36 E -73.4 -26.5 NA NA NA
2ghq 1 Q9GZU7 99.44 2e-130 X-RAY
 2006-12-05 ARG A:98 A:173 78.0 0.347 E -78.3 -23.5 78.0 0.347 0.0 HOH
 4.375
 C
 O
ARG B:98 B:173 83.0 0.369 E -85.3 -22.1 NA NA NA
2ght 1 Q9GZU7 99.44 2e-130 X-RAY
 2006-12-05 ARG A:98 A:173 58.0 0.258 E -73.3 -27.4 58.0 0.258 0.0 HOH
 3.803
 O
 O
ARG B:98 B:173 82.0 0.364 E -78.6 -18.6 NA NA NA
3l0y 1 Q9GZU7 99.44 3e-130 X-RAY
 2010-03-23 ARG A:101 A:173 94.0 0.418 E -80.6 -21.4 94.0 0.418 0.0 HOH
 3.142
 CZ
 O
ARG B:101 B:173 76.0 0.338 E -81.7 -29.3 NA NA NA
3l0b 1 Q9GZU7 99.44 3e-130 X-RAY
 2010-03-23 ARG A:101 A:173 93.0 0.413 E -86.1 -28.6 93.0 0.413 0.0 HOH
 2.358
 NH1
 O
ARG B:101 B:173 81.0 0.36 E -76.0 -23.3 NA NA NA
3l0c 1 Q9GZU7 99.44 3e-130 X-RAY
 2010-03-23 ARG A:101 A:173 90.0 0.4 E -81.9 -19.2 90.0 0.4 0.0 HOH
 4.422
 C
 O
ARG B:101 B:173 73.0 0.324 E -80.9 -20.2 NA NA NA
2hhl 1 O15194 82.29 3e-107 X-RAY
 2006-08-29 ARG A:111 A:111 89.0 0.396 E -65.0 -34.2 89.0 0.396 0.0 HOH
 3.194
 CZ
 O
ARG B:111 B:111 96.0 0.427 E -79.0 -23.9 NA NA NA
ARG C:111 C:111 87.0 0.387 E -74.1 -19.9 NA NA NA
ARG D:111 D:111 96.0 0.427 E -75.5 -19.0 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9gzu7-f1 1 Q9GZU7 100.0 0.0 ARG A:173 A:173 70.0 0.311 E -75.9 -26.8