Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 219268006 . C A CCDS56166.1:NM_001206878.1:c.520Cgg>Agg_NP_001193807.1:p.174R>R Homo sapiens CTD small phosphatase 1 (CTDSP1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1ta0 1 Q9GZU7 99.46 1e-135 X-RAY
 2004-08-31 ARG A:100 A:175 70.0 0.311 E -126.7 125.7 70.0 0.311 0.0 HOH
 2.568
 NH2
 O
1t9z 1 Q9GZU7 98.39 3e-135 X-RAY
 2004-08-31 ARG A:100 A:175 68.0 0.302 E -129.0 125.1 68.0 0.302 0.0 HOH
 2.562
 NH2
 O
4ygy 1 Q9GZU7 99.46 1e-134 X-RAY
 2015-09-16 ARG A:103 A:175 68.0 0.302 E -137.2 133.2 68.0 0.302 0.0 HOH
 2.805
 NH2
 O
ARG B:103 B:175 66.0 0.293 E -131.0 130.8 NA NA NA
4yh1 1 Q9GZU7 99.46 1e-134 X-RAY
 2015-09-16 ARG A:103 A:175 64.0 0.284 E -139.0 129.9 64.0 0.284 0.0 HOH
 2.790
 O
 O
ARG B:103 B:175 66.0 0.293 E -129.6 127.9 NA NA NA
3pgl 1 Q9GZU7 100.0 4e-131 X-RAY
 2011-03-09 ARG A:99 A:175 64.0 0.284 E -129.8 122.8 64.0 0.284 0.0 HOH
 2.885
 NH2
 O
ARG B:99 B:175 66.0 0.293 E -138.3 126.8 NA NA NA
6du2 1 A0A1S2ZIN9 99.44 1e-130 X-RAY
 2018-09-26 ARG A:99 A:175 64.0 0.284 E -131.1 132.3 64.0 0.284 0.0 HOH
 3.177
 NE
 O
ARG B:99 B:175 70.0 0.311 E -132.1 129.8 NA NA NA
6du3 1 Q9GZU7 99.44 1e-130 X-RAY
 2018-09-26 ARG A:99 A:175 68.0 0.302 E -127.7 126.0 68.0 0.302 0.0 HOH
 2.777
 NH2
 O
ARG B:99 B:175 68.0 0.302 E -139.6 126.4 NA NA NA
2ghq 1 Q9GZU7 99.44 2e-130 X-RAY
 2006-12-05 ARG A:100 A:175 67.0 0.298 E -134.5 128.8 67.0 0.298 0.0 HOH
 2.837
 O
 O
ARG B:100 B:175 69.0 0.307 E -129.5 129.5 NA NA NA
2ght 1 Q9GZU7 99.44 2e-130 X-RAY
 2006-12-05 ARG A:100 A:175 63.0 0.28 E -137.1 129.6 63.0 0.28 0.0 HOH
 2.713
 NH2
 O
ARG B:100 B:175 69.0 0.307 E -132.6 132.2 NA NA NA
3l0y 1 Q9GZU7 99.44 3e-130 X-RAY
 2010-03-23 ARG A:103 A:175 73.0 0.324 E -126.9 123.9 73.0 0.324 0.0 HOH
 2.757
 NH2
 O
ARG B:103 B:175 72.0 0.32 E -136.3 127.0 NA NA NA
3l0b 1 Q9GZU7 99.44 3e-130 X-RAY
 2010-03-23 ARG A:103 A:175 68.0 0.302 E -129.1 130.3 68.0 0.302 0.0 HOH
 2.863
 NH2
 O
ARG B:103 B:175 65.0 0.289 E -139.8 126.1 NA NA NA
3l0c 1 Q9GZU7 99.44 3e-130 X-RAY
 2010-03-23 ARG A:103 A:175 68.0 0.302 E -128.3 134.7 68.0 0.302 0.0 HOH
 2.698
 N
 O
ARG B:103 B:175 69.0 0.307 E -135.9 128.9 NA NA NA
2hhl 1 O15194 82.29 3e-107 X-RAY
 2006-08-29 ARG A:113 A:113 67.0 0.298 E -135.8 125.1 67.0 0.298 0.0 HOH
 2.893
 O
 O
ARG B:113 B:113 67.0 0.298 E -129.7 124.3 NA NA NA
ARG C:113 C:113 68.0 0.302 E -131.1 127.4 NA NA NA
ARG D:113 D:113 68.0 0.302 E -127.3 116.8 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9gzu7-f1 1 Q9GZU7 100.0 0.0 ARG A:175 A:175 72.0 0.32 E -126.6 126.7