Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 219269098 . C A CCDS56166.1:NM_001206878.1:c.733Cgt>Agt_NP_001193807.1:p.245R>S Homo sapiens CTD small phosphatase 1 (CTDSP1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1ta0 1 Q9GZU7 99.46 1e-135 X-RAY
 2004-08-31 ARG A:171 A:246 192.0 0.853 T -107.5 -2.5 192.0 0.853 0.0 HOH
 2.570
 NH1
 O
1t9z 1 Q9GZU7 98.39 3e-135 X-RAY
 2004-08-31 ARG A:171 A:246 184.0 0.818 T -105.1 -3.9 184.0 0.818 0.0 HOH
 2.618
 NH2
 O
4ygy 1 Q9GZU7 99.46 1e-134 X-RAY
 2015-09-16 ARG A:174 A:246 194.0 0.862 T -86.8 -30.5 194.0 0.862 0.0 HOH
 5.253
 N
 O
ARG B:174 B:246 155.0 0.689 T -106.5 -7.8 NA NA NA
4yh1 1 Q9GZU7 99.46 1e-134 X-RAY
 2015-09-16 ARG A:174 A:246 193.0 0.858 H -83.8 -34.7 193.0 0.858 0.0 HOH
 3.082
 O
 O
ARG B:174 B:246 164.0 0.729 H -95.0 -9.8 NA NA NA
3pgl 1 Q9GZU7 100.0 4e-131 X-RAY
 2011-03-09 ARG A:170 A:246 161.0 0.716 H -96.1 -17.8 161.0 0.716 0.0 HOH
 2.930
 NH2
 O
ARG B:170 B:246 185.0 0.822 H -81.7 -21.4 NA NA NA
6du2 1 A0A1S2ZIN9 99.44 1e-130 X-RAY
 2018-09-26 ARG A:170 A:246 153.0 0.68 T -112.1 -7.9 153.0 0.68 0.0
ARG B:170 B:246 182.0 0.809 T -99.8 -1.1 NA NA NA
6du3 1 Q9GZU7 99.44 1e-130 X-RAY
 2018-09-26 ARG A:170 A:246 156.0 0.693 T -104.5 -10.6 156.0 0.693 0.0
ARG B:170 B:246 169.0 0.751 H -67.0 -44.2 NA NA NA
2ghq 1 Q9GZU7 99.44 2e-130 X-RAY
 2006-12-05 ARG A:171 A:246 184.0 0.818 T -85.7 -38.8 184.0 0.818 0.0 HOH
 3.568
 O
 O
ARG B:171 B:246 160.0 0.711 H -94.1 -11.8 NA NA NA
2ght 1 Q9GZU7 99.44 2e-130 X-RAY
 2006-12-05 ARG A:171 A:246 180.0 0.8 T -97.5 -28.8 180.0 0.8 0.0 HOH
 3.579
 C
 O
ARG B:171 B:246 159.0 0.707 H -95.6 -14.5 NA NA NA
3l0y 1 Q9GZU7 99.44 3e-130 X-RAY
 2010-03-23 ARG A:174 A:246 157.0 0.698 T -92.3 -15.2 157.0 0.698 0.0 HOH
 3.427
 C
 O
ARG B:174 B:246 185.0 0.822 T -96.8 -9.7 NA NA NA
3l0b 1 Q9GZU7 99.44 3e-130 X-RAY
 2010-03-23 ARG A:174 A:246 155.0 0.689 T -102.7 -15.7 155.0 0.689 0.0 HOH
 3.646
 C
 O
ARG B:174 B:246 180.0 0.8 T -117.7 24.0 NA NA NA
3l0c 1 Q9GZU7 99.44 3e-130 X-RAY
 2010-03-23 ARG A:174 A:246 170.0 0.756 H -103.4 -21.0 170.0 0.756 0.0 HOH
 2.585
 O
 O
ARG B:174 B:246 177.0 0.787 T -100.2 -4.5 NA NA NA
2hhl 1 O15194 82.29 3e-107 X-RAY
 2006-08-29 ARG A:184 A:184 221.0 0.982 78.7 360.0 221.0 0.982 0.0 HOH
 4.005
 CD
 O
ARG B:184 B:184 217.0 0.964 -128.8 360.0 NA NA NA
ARG C:184 C:184 175.0 0.778 H -69.7 -38.3 NA NA NA
ARG D:184 D:184 188.0 0.836 H -57.8 -32.5 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9gzu7-f1 1 Q9GZU7 100.0 0.0 ARG A:246 A:246 165.0 0.733 T -102.9 -5.4