Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 232645779 . T A CCDS33398.1:NM_002601.2:c.46Aaa>Taa_NP_002592.1:p.16K>* Homo sapiens phosphodiesterase 6D, cGMP-specific, rod, delta (PDE6D), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
7qjk 1 O43924 100.0 2e-110 X-RAY
 2022-01-26 LYS A:17 BBB:16 120.0 0.6 E -158.1 139.4 120.0 0.6 0.0 9VO
 9.739
 C
 C12
LYS B:17 AAA:16 107.0 0.535 E -157.9 138.4 NA NA NA
LYS C:17 CCC:16 114.0 0.57 E -155.1 134.2 NA NA NA
LYS D:17 DDD:16 98.0 0.49 E -156.4 136.7 NA NA NA
1ksg 2 O43924 100.0 2e-110 X-RAY
 2002-05-08 LYS B:18 B:16 87.0 0.435 E -143.8 126.2 87.0 0.435 0.0 HOH
 3.404
 CD
 O
1ksh 2 O43924 100.0 2e-110 X-RAY
 2002-05-08 LYS B:18 B:16 77.0 0.385 E -155.2 130.1 77.0 0.385 0.0 HOH
 2.970
 CE
 O
1ksj 2 O43924 100.0 2e-110 X-RAY
 2002-05-08 LYS B:18 B:16 65.0 0.325 E -141.3 124.8 65.0 0.325 0.0 HOH
 4.367
 O
 O
3t5g 2 O43924 100.0 2e-110 X-RAY
 2011-10-26 LYS B:18 B:16 97.0 0.485 E -148.7 146.5 97.0 0.485 0.0 FAR
HOH
 9.216
3.677
 C
CE
 C15
O
3t5i 1 O43924 100.0 2e-110 X-RAY
 2011-11-02 LYS A:18 B:16 110.0 0.55 E -150.4 132.1 NA NA NA
LYS B:18 A:16 101.0 0.505 E -137.7 137.0 101.0 0.505 0.0 FAR
HOH
 9.800
3.807
 C
CD
 C15
O
LYS C:18 C:16 105.0 0.525 E -144.7 145.1 NA NA NA
LYS D:18 D:16 108.0 0.54 E -147.0 143.6 NA NA NA
4jhp 1 O43924 100.0 2e-110 X-RAY
 2013-04-17 LYS A:18 B:16 105.0 0.525 E -149.7 127.9 105.0 0.525 0.0 HOH
 2.741
 NZ
 O
4jv6 1 O43924 100.0 2e-110 X-RAY
 2013-05-22 LYS A:18 B:16 120.0 0.6 E -146.5 136.6 120.0 0.6 0.0 18F
HOH
 9.319
2.748
 C
NZ
 CAG
O
4jv8 1 O43924 100.0 2e-110 X-RAY
 2013-05-22 LYS A:18 B:16 124.0 0.62 E -148.1 134.9 124.0 0.62 0.0 1M1
HOH
 9.625
2.823
 C
NZ
 CAM
O
4jvb 1 O43924 100.0 2e-110 X-RAY
 2013-05-22 LYS A:18 B:16 105.0 0.525 E -144.4 136.4 105.0 0.525 0.0 1M0
HOH
 9.298
2.823
 C
NZ
 CBE
O
4jvf 1 O43924 100.0 2e-110 X-RAY
 2013-05-22 LYS A:18 B:16 121.0 0.605 E -145.5 130.3 121.0 0.605 0.0 17X
HOH
 9.618
4.039
 C
CB
 CAX
O
5nal 1 O43924 100.0 3e-110 X-RAY
 2017-05-10 LYS A:16 B:16 112.0 0.56 E -152.4 128.8 112.0 0.56 0.0 8RQ
HOH
 9.013
3.117
 C
CD
 CL1
O
5tb5 2 O43924 100.0 3e-110 X-RAY
 2016-11-02 LYS B:16 B:16 126.0 0.63 E -142.6 134.4 126.0 0.63 0.0 FAR
HOH
 7.041
4.431
 C
CE
 C15
O
LYS D:16 D:16 134.0 0.67 E -145.1 118.8 NA NA NA
5x72 1 O43924 100.0 3e-110 X-RAY
 2017-10-04 LYS A:16 A:16 124.0 0.62 E -143.8 140.7 124.0 0.62 0.0 P59
HOH
 9.077
3.140
 C
NZ
 CAB
O
5x73 1 O43924 100.0 3e-110 X-RAY
 2017-10-04 LYS A:16 A:16 102.0 0.51 E -144.0 132.5 102.0 0.51 0.0 P59
HOH
 9.394
7.913
 C
CB
 CAB
O
5yav 1 O43924 100.0 3e-110 X-RAY
 2018-09-05 LYS A:16 B:16 111.0 0.555 E -144.8 131.1 111.0 0.555 0.0 8SF
HOH
 8.929
3.091
 C
NZ
 H3
O
5yaw 1 O43924 100.0 3e-110 X-RAY
 2018-09-05 LYS A:16 B:16 110.0 0.55 E -145.0 124.6 110.0 0.55 0.0 8SL
HOH
 7.582
2.627
 C
CE
 O25
O
7q9r 1 O43924 100.0 3e-110 X-RAY
 2022-01-19 LYS A:16 BBB:16 112.0 0.56 E -157.1 125.8 112.0 0.56 0.0 FAR
EDO
EDO
HOH
 9.853
9.207
6.947
2.617
 C
N
C
CE
 C15
C2
C2
O
7q9s 1 O43924 100.0 3e-110 X-RAY
 2022-01-19 LYS A:16 BBB:16 117.0 0.585 E -148.5 129.9 117.0 0.585 0.0 HOH
 3.034
 NZ
 O
LYS B:16 AAA:16 112.0 0.56 E -151.4 137.2 NA NA NA
7q9u 2 O43924 100.0 3e-110 X-RAY
 2022-01-26 LYS C:16 DDD:16 120.0 0.6 E -141.2 126.5 NA NA NA
LYS D:16 CCC:16 124.0 0.62 E -143.5 126.5 NA NA NA
5x74 1 O43924 99.33 9e-110 X-RAY
 2017-10-04 LYS A:16 A:16 106.0 0.53 E -148.9 136.3 106.0 0.53 0.0 JAY
HOH
 9.603
5.622
 C
N
 CAB
O
5e8f 1 O43924 100.0 2e-109 X-RAY
 2015-11-18 LYS A:15 A:16 116.0 0.58 E -156.1 111.1 116.0 0.58 0.0 GER
HOH
 7.029
6.138
 C
N
 C19
O
LYS B:15 C:16 114.0 0.57 E -155.2 123.9 NA NA NA
5f2u 1 O43924 100.0 2e-109 X-RAY
 2016-04-13 LYS A:15 A:16 99.0 0.495 E -156.2 153.4 99.0 0.495 0.0 HOH
 3.955
 NZ
 O
LYS B:15 B:16 95.0 0.475 E -157.0 150.4 NA NA NA
5ml2 1 O43924 100.0 2e-109 X-RAY
 2017-02-01 LYS A:15 B:16 125.0 0.625 E -146.6 138.4 125.0 0.625 0.0 NH6
HOH
 8.856
2.899
 C
NZ
 CL
O
5ml3 1 O43924 100.0 2e-109 X-RAY
 2017-02-01 LYS A:15 B:16 125.0 0.625 E -145.2 134.4 125.0 0.625 0.0 DL3
HOH
 8.872
2.738
 C
NZ
 CL
O
5ml4 1 O43924 100.0 2e-109 X-RAY
 2017-02-01 LYS A:15 B:16 107.0 0.535 E -146.3 129.3 107.0 0.535 0.0 RRQ
HOH
 8.931
3.534
 C
CE
 CL
O
5ml6 1 O43924 100.0 2e-109 X-RAY
 2017-02-01 LYS A:15 B:16 113.0 0.565 E -143.4 132.6 113.0 0.565 0.0 9GD
HOH
 8.932
2.833
 C
NZ
 CL
O
5ml8 1 O43924 100.0 2e-109 X-RAY
 2017-02-01 LYS A:15 B:16 102.0 0.51 E -144.5 127.8 102.0 0.51 0.0 V98
HOH
 8.612
3.725
 C
CB
 CL
O
7q9q 1 O43924 100.0 2e-109 X-RAY
 2022-01-19 LYS A:19 BBB:16 122.0 0.61 E -142.0 138.6 122.0 0.61 0.0 GER
EDO
HOH
 7.075
5.107
3.636
 C
N
CD
 C20
O1
O
5t4x 1 O55057 98.0 3e-109 X-RAY
 2018-01-10 LYS A:36 A:16 101.0 0.505 E -147.5 126.8 101.0 0.505 0.0 HOH
 2.910
 NZ
 O
5tar 2 O43924 100.0 7e-109 X-RAY
 2016-11-02 LYS B:14 B:16 102.0 0.51 E -145.3 131.0 102.0 0.51 0.0 HOH
 6.270
 N
 O
5e80 1 O43924 99.33 1e-108 X-RAY
 2016-05-04 LYS A:15 B:16 102.0 0.51 E -152.0 155.8 102.0 0.51 0.0 5KP
 9.137
 C
 CAP
LYS B:15 A:16 108.0 0.54 E -152.3 134.4 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o43924-f1 1 O43924 100.0 1e-110 LYS A:16 A:16 111.0 0.555 E -147.0 130.7