Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241808304 . G A CCDS2543.1:NM_000030.2:c.22Gtg>Atg_NP_000021.1:p.8V>M Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 VAL A:8 A:8 119.0 0.768 S -92.5 136.4 25.0 0.161 0.607 A:P21549:0.606
 HOH
 3.628
 CG1
 O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 VAL A:8 A:8 122.0 0.787 -97.4 130.5 22.0 0.142 0.645 A:P21549:0.645
 HOH
 3.124
 CG1
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 VAL A:8 A:8 110.0 0.71 S -92.7 141.6 22.0 0.142 0.568 A:P21549:0.568
 HOH
 9.855
 O
 O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 VAL A:8 A:8 126.0 0.813 S -93.3 136.8 32.0 0.206 0.607 A:P21549:0.606
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 VAL A:10 A:8 109.0 0.703 S -110.8 126.9 27.0 0.174 0.529 C:P21549:0.529
 HOH
 4.377
 CA
 O
VAL C:10 C:8 111.0 0.716 S -105.5 124.1 9.0 0.058 0.658 A:P21549:0.658
 HOH
 3.458
 CG1
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 VAL A:8 A:8 132.0 0.852 S -89.9 124.5 34.0 0.219 0.633 A:P21549:0.632
 HOH
 9.519
 O
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 VAL A:10 A:8 112.0 0.723 S -127.0 127.5 18.0 0.116 0.607 B:P21549:0.606
 HOH
 3.402
 CA
 O
VAL B:10 C:8 108.0 0.697 S -123.4 126.8 22.0 0.142 0.555 A:P21549:0.555
 HOH
 2.864
 O
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 VAL A:10 A:8 109.0 0.703 S -122.5 118.7 17.0 0.11 0.593 B:P21549:0.594
VAL B:10 B:8 111.0 0.716 S -126.7 117.5 27.0 0.174 0.542 A:P21549:0.542
VAL C:10 C:8 113.0 0.729 S -120.4 118.3 NA NA NA
VAL D:10 D:8 111.0 0.716 S -115.6 120.3 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 VAL A:8 A:8 119.0 0.768 S -95.9 133.8 119.0 0.768 0.0 HOH
 3.850
 CG1
 O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 VAL A:19 A:8 129.0 0.832 S -89.9 125.5 14.0 0.09 0.742 B:P21549:0.742
 HOH
 2.734
 O
 O
VAL B:19 B:8 115.0 0.742 S -117.1 132.0 23.0 0.148 0.594 A:P21549:0.594
 HOH
 2.848
 O
 O
VAL C:19 E:8 130.0 0.839 S -93.3 124.8 NA NA NA
VAL D:19 G:8 111.0 0.716 S -116.4 134.8 NA NA NA
VAL E:19 M:8 116.0 0.748 S -120.2 129.8 NA NA NA
VAL F:19 N:8 128.0 0.826 S -88.8 119.5 NA NA NA
VAL G:19 S:8 111.0 0.716 S -103.4 131.3 NA NA NA
VAL H:19 T:8 108.0 0.697 S -117.5 130.7 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 VAL A:10 A:8 115.0 0.742 S -114.1 132.1 15.0 0.097 0.645 B:P21549:0.645
 HOH
 8.676
 CG1
 O
VAL B:10 C:8 113.0 0.729 S -122.7 134.6 15.0 0.097 0.632 A:P21549:0.632
 HOH
 9.305
 O
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 VAL A:8 A:8 123.0 0.794 S -97.4 126.2 22.0 0.142 0.652 A:P21549:0.652
 HOH
 3.279
 CG1
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 VAL A:8 A:8 115.0 0.742 S -101.4 133.5 29.0 0.187 0.555 A:P21549:0.555
 HOH
 4.556
 CG1
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 VAL A:3 A:8 106.0 0.684 S -120.0 130.6 26.0 0.168 0.516 B:P21549:0.516
 HOH
 2.325
 HA
 O
VAL B:3 B:8 104.0 0.671 S -111.5 125.2 21.0 0.135 0.536 A:P21549:0.535
 HOH
 2.350
 HA
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 VAL A:3 A:8 106.0 0.684 S -121.8 132.2 27.0 0.174 0.51 B:P21549:0.51
 HOH
 2.514
 HA
 O
VAL B:3 B:8 107.0 0.69 S -114.5 125.3 21.0 0.135 0.555 A:P21549:0.555
 HOH
 2.480
 HA
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 VAL A:8 A:8 107.0 0.69 S -115.6 133.0 23.0 0.148 0.542 B:P21549:0.542
 HOH
 2.825
 O
 O
VAL B:8 B:8 111.0 0.716 -110.9 134.6 24.0 0.155 0.561 A:P21549:0.561
 HOH
 2.649
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 VAL A:8 A:8 120.0 0.774 S -103.3 118.1