Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241808308 . C A CCDS2543.1:NM_000030.2:c.26aCc>aAc_NP_000021.1:p.9T>N Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 THR A:9 A:9 89.0 0.636 -99.2 153.3 88.0 0.629 0.007 A:P21549:0.007
 HOH
 2.690
 O
 O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 THR A:9 A:9 107.0 0.764 -95.3 147.6 105.0 0.75 0.014 A:P21549:0.014
 HOH
 2.791
 O
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 THR A:9 A:9 105.0 0.75 -104.3 157.0 102.0 0.729 0.021 A:P21549:0.021
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 THR A:9 A:9 107.0 0.764 -102.0 155.4 105.0 0.75 0.014 A:P21549:0.014
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 THR A:11 A:9 103.0 0.736 -83.3 161.2 101.0 0.721 0.015 C:P21549:0.014
 HOH
 3.155
 OG1
 O
THR C:11 C:9 98.0 0.7 -86.3 157.7 92.0 0.657 0.043 A:P21549:0.043
 HOH
 2.864
 O
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 THR A:9 A:9 102.0 0.729 -103.1 159.1 99.0 0.707 0.022 A:P21549:0.021
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 THR A:11 A:9 108.0 0.771 -97.5 162.0 105.0 0.75 0.021 B:P21549:0.021
 HOH
 2.760
 O
 O
THR B:11 C:9 110.0 0.786 -89.9 160.0 108.0 0.771 0.015 A:P21549:0.014
 HOH
 2.657
 O
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 THR A:11 A:9 98.0 0.7 -75.8 160.5 96.0 0.686 0.014 B:P21549:0.014
THR B:11 B:9 83.0 0.593 -74.1 162.4 82.0 0.586 0.007 A:P21549:0.007
THR C:11 C:9 106.0 0.757 -77.5 161.3 NA NA NA
THR D:11 D:9 77.0 0.55 -69.6 157.2 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 THR A:9 A:9 86.0 0.614 -103.5 163.1 86.0 0.614 0.0 HOH
 2.706
 O
 O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 THR A:20 A:9 94.0 0.671 -99.2 157.6 90.0 0.643 0.028 B:P21549:0.029
 HOH
 2.617
 O
 O
THR B:20 B:9 112.0 0.8 -96.5 158.7 110.0 0.786 0.014 A:P21549:0.014
 HOH
 2.638
 OG1
 O
THR C:20 E:9 99.0 0.707 -100.4 158.9 NA NA NA
THR D:20 G:9 111.0 0.793 -99.6 158.5 NA NA NA
THR E:20 M:9 113.0 0.807 -90.8 156.2 NA NA NA
THR F:20 N:9 104.0 0.743 -94.5 161.7 NA NA NA
THR G:20 S:9 106.0 0.757 -97.5 159.6 NA NA NA
THR H:20 T:9 111.0 0.793 -93.7 158.6 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 THR A:11 A:9 102.0 0.729 -102.3 156.9 101.0 0.721 0.008 B:P21549:0.007
 HOH
 7.084
 O
 O
THR B:11 C:9 108.0 0.771 -99.1 160.1 104.0 0.743 0.028 A:P21549:0.029
 HOH
 9.722
 C
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 THR A:9 A:9 102.0 0.729 -87.9 154.6 101.0 0.721 0.008 A:P21549:0.007
 HOH
 2.380
 OG1
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 THR A:9 A:9 102.0 0.729 -99.7 153.2 100.0 0.714 0.015 A:P21549:0.014
 HOH
 3.454
 O
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 THR A:4 A:9 107.0 0.764 -93.2 162.7 104.0 0.743 0.021 B:P21549:0.021
 HOH
 1.617
 HG1
 O
THR B:4 B:9 101.0 0.721 -91.7 163.7 99.0 0.707 0.014 A:P21549:0.014
 HOH
 2.399
 H
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 THR A:4 A:9 108.0 0.771 -94.3 158.5 105.0 0.75 0.021 B:P21549:0.021
 HOH
 2.160
 H
 O
THR B:4 B:9 101.0 0.721 -91.4 162.8 99.0 0.707 0.014 A:P21549:0.014
 HOH
 2.302
 H
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 THR A:9 A:9 110.0 0.786 -96.1 160.9 108.0 0.771 0.015 B:P21549:0.014
 HOH
 2.590
 O
 O
THR B:9 B:9 109.0 0.779 -96.4 160.9 106.0 0.757 0.022 A:P21549:0.021
 HOH
 2.895
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 THR A:9 A:9 113.0 0.807 -79.1 157.4