Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241808310 . C A CCDS2543.1:NM_000030.2:c.28Ccc>Acc_NP_000021.1:p.10P>T Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 PRO A:10 A:10 99.0 0.683 -46.9 123.4 47.0 0.324 0.359 A:P21549:0.359
 HOH
 3.690
 CG
 O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 PRO A:10 A:10 101.0 0.697 -46.6 123.5 52.0 0.359 0.338 A:P21549:0.338
 HOH
 4.533
 C
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 PRO A:10 A:10 97.0 0.669 -48.9 125.6 48.0 0.331 0.338 A:P21549:0.338
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 PRO A:10 A:10 96.0 0.662 -51.4 119.3 47.0 0.324 0.338 A:P21549:0.338
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 PRO A:12 A:10 92.0 0.634 -54.6 128.8 47.0 0.324 0.31 C:P21549:0.31
 HOH
 6.109
 N
 O
PRO C:12 C:10 96.0 0.662 -59.7 133.1 46.0 0.317 0.345 A:P21549:0.345
 HOH
 2.772
 O
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 PRO A:10 A:10 96.0 0.662 -51.3 117.4 51.0 0.352 0.31 A:P21549:0.31
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 PRO A:12 A:10 101.0 0.697 -58.7 129.9 54.0 0.372 0.325 B:P21549:0.324
 HOH
 3.917
 CD
 O
PRO B:12 C:10 93.0 0.641 -60.8 131.4 47.0 0.324 0.317 A:P21549:0.317
 HOH
 2.836
 O
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 PRO A:12 A:10 82.0 0.566 -59.7 127.1 42.0 0.29 0.276 B:P21549:0.276
PRO B:12 B:10 83.0 0.572 -61.9 128.4 39.0 0.269 0.303 A:P21549:0.303
PRO C:12 C:10 90.0 0.621 -60.7 127.2 NA NA NA
PRO D:12 D:10 85.0 0.586 -57.4 126.9 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 PRO A:10 A:10 90.0 0.621 -46.5 129.6 90.0 0.621 0.0 HOH
 3.822
 O
 O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 PRO A:21 A:10 96.0 0.662 -53.8 120.9 48.0 0.331 0.331 B:P21549:0.331
 HOH
 2.761
 O
 O
PRO B:21 B:10 94.0 0.648 -58.7 130.3 45.0 0.31 0.338 A:P21549:0.338
 HOH
 2.688
 O
 O
PRO C:21 E:10 101.0 0.697 -54.5 124.8 NA NA NA
PRO D:21 G:10 92.0 0.634 -56.2 131.1 NA NA NA
PRO E:21 M:10 94.0 0.648 -56.8 129.4 NA NA NA
PRO F:21 N:10 91.0 0.628 -59.9 126.3 NA NA NA
PRO G:21 S:10 91.0 0.628 -59.2 127.5 NA NA NA
PRO H:21 T:10 97.0 0.669 -58.9 131.9 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 PRO A:12 A:10 98.0 0.676 -52.6 126.8 50.0 0.345 0.331 B:P21549:0.331
 HOH
 5.823
 O
 O
PRO B:12 C:10 102.0 0.703 -51.8 122.2 54.0 0.372 0.331 A:P21549:0.331
 HOH
 7.144
 CG
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 PRO A:10 A:10 98.0 0.676 -58.0 131.0 48.0 0.331 0.345 A:P21549:0.345
 HOH
 3.391
 CD
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 PRO A:10 A:10 94.0 0.648 -44.5 122.6 49.0 0.338 0.31 A:P21549:0.31
 HOH
 4.133
 CB
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 PRO A:5 A:10 98.0 0.676 -55.0 126.4 50.0 0.345 0.331 B:P21549:0.331
 HOH
 2.600
 HD3
 O
PRO B:5 B:10 83.0 0.572 -59.0 132.3 41.0 0.283 0.289 A:P21549:0.29
 HOH
 2.214
 HD3
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 PRO A:5 A:10 97.0 0.669 -51.3 128.8 49.0 0.338 0.331 B:P21549:0.331
 HOH
 2.595
 O
 O
PRO B:5 B:10 85.0 0.586 -55.4 130.1 40.0 0.276 0.31 A:P21549:0.31
 HOH
 2.392
 HD3
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 PRO A:10 A:10 96.0 0.662 -60.5 132.3 47.0 0.324 0.338 B:P21549:0.338
 HOH
 2.313
 O
 O
PRO B:10 B:10 92.0 0.634 -59.2 123.4 48.0 0.331 0.303 A:P21549:0.303
 HOH
 2.652
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 PRO A:10 A:10 96.0 0.662 -50.7 125.8