Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241808314 . C A CCDS2543.1:NM_000030.2:c.32cCc>cAc_NP_000021.1:p.11P>H Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 PRO A:11 A:11 69.0 0.476 -58.3 127.9 5.0 0.034 0.442 A:P21549:0.441
 HOH
 3.820
 C
 O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 PRO A:11 A:11 73.0 0.503 -60.3 126.6 11.0 0.076 0.427 A:P21549:0.428
 HOH
 3.541
 CG
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 PRO A:11 A:11 75.0 0.517 -55.3 127.3 7.0 0.048 0.469 A:P21549:0.469
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 PRO A:11 A:11 87.0 0.6 -54.9 119.4 16.0 0.11 0.49 A:P21549:0.49
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 PRO A:13 A:11 63.0 0.434 -64.2 127.6 4.0 0.028 0.406 C:P21549:0.407
 HOH
 3.849
 C
 O
PRO C:13 C:11 59.0 0.407 -67.3 132.6 3.0 0.021 0.386 A:P21549:0.386
 HOH
 4.024
 C
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 PRO A:11 A:11 76.0 0.524 -59.1 120.2 9.0 0.062 0.462 A:P21549:0.462
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 PRO A:13 A:11 72.0 0.497 -66.3 128.7 11.0 0.076 0.421 B:P21549:0.421
 HOH
 3.700
 CA
 O
PRO B:13 C:11 69.0 0.476 -70.7 128.6 10.0 0.069 0.407 A:P21549:0.407
 HOH
 3.604
 CA
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 PRO A:13 A:11 67.0 0.462 -53.5 139.4 11.0 0.076 0.386 B:P21549:0.386
PRO B:13 B:11 64.0 0.441 -56.9 139.7 9.0 0.062 0.379 A:P21549:0.379
PRO C:13 C:11 65.0 0.448 -57.5 139.8 NA NA NA
PRO D:13 D:11 64.0 0.441 -58.6 139.7 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 PRO A:11 A:11 68.0 0.469 -66.3 125.0 68.0 0.469 0.0 HOH
 3.614
 CA
 O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 PRO A:22 A:11 75.0 0.517 -64.7 124.7 10.0 0.069 0.448 B:P21549:0.448
 HOH
 3.765
 CG
 O
PRO B:22 B:11 73.0 0.503 -66.3 128.0 9.0 0.062 0.441 A:P21549:0.441
 HOH
 3.742
 CG
 O
PRO C:22 E:11 76.0 0.524 -63.6 125.6 NA NA NA
PRO D:22 G:11 74.0 0.51 -69.6 128.2 NA NA NA
PRO E:22 M:11 75.0 0.517 -66.4 128.4 NA NA NA
PRO F:22 N:11 75.0 0.517 -68.8 127.5 NA NA NA
PRO G:22 S:11 74.0 0.51 -65.8 129.0 NA NA NA
PRO H:22 T:11 74.0 0.51 -71.3 130.8 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 PRO A:13 A:11 70.0 0.483 -70.8 118.7 7.0 0.048 0.435 B:P21549:0.434
 HOH
 3.705
 C
 O
PRO B:13 C:11 70.0 0.483 -70.1 121.3 10.0 0.069 0.414 A:P21549:0.414
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 PRO A:11 A:11 70.0 0.483 -66.3 126.6 9.0 0.062 0.421 A:P21549:0.421
 HOH
 3.677
 CA
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 PRO A:11 A:11 70.0 0.483 -65.1 120.3 8.0 0.055 0.428 A:P21549:0.428
 HOH
 3.362
 CA
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 PRO A:6 A:11 72.0 0.497 -64.1 125.6 12.0 0.083 0.414 B:P21549:0.414
 HOH
 2.631
 HG3
 O
PRO B:6 B:11 75.0 0.517 -68.3 123.3 14.0 0.097 0.42 A:P21549:0.421
 HOH
 2.563
 HA
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 PRO A:6 A:11 72.0 0.497 -68.1 124.8 11.0 0.076 0.421 B:P21549:0.421
 HOH
 2.814
 HG3
 O
PRO B:6 B:11 74.0 0.51 -67.0 124.7 15.0 0.103 0.407 A:P21549:0.407
 HOH
 2.691
 HA
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 PRO A:11 A:11 74.0 0.51 -69.9 119.6 12.0 0.083 0.427 B:P21549:0.428
 HOH
 3.637
 CG
 O
PRO B:11 B:11 74.0 0.51 -56.6 125.3 13.0 0.09 0.42 A:P21549:0.421
 HOH
 3.598
 C
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 PRO A:11 A:11 75.0 0.517 -66.1 121.7