Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241808317 . A C CCDS2543.1:NM_000030.2:c.35aAg>aCg_NP_000021.1:p.12K>T Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 LYS A:12 A:12 164.0 0.82 G -54.2 -45.0 162.0 0.81 0.01 A:P21549:0.01
 GOL
HOH
 9.358
2.809
 O
CD
 O3
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 LYS A:12 A:12 81.0 NA G -57.6 -32.6 80.0 NA NA A:P21549:NA
 HOH
 6.117
 N
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 LYS A:12 A:12 85.0 NA G -67.9 -29.7 83.0 NA NA A:P21549:NA
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 LYS A:12 A:12 85.0 NA G -53.0 -45.5 85.0 NA NA
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 LYS A:14 A:12 161.0 0.805 T -65.3 -34.8 145.0 0.725 0.08 C:P21549:0.08
 HOH
 2.799
 O
 O
LYS C:14 C:12 143.0 0.715 T -70.3 -32.7 124.0 0.62 0.095 A:P21549:0.095
 HOH
 3.240
 NZ
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 LYS A:12 A:12 84.0 NA G -51.6 -44.8 81.0 NA NA A:P21549:NA
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 LYS A:14 A:12 77.0 NA G -54.0 -43.8 76.0 NA NA B:P21549:NA
 BME
HOH
 9.920
3.101
 O
O
 C2
O
LYS B:14 C:12 164.0 0.82 G -58.6 -47.0 164.0 0.82 0.0 BME
HOH
 9.685
2.775
 O
N
 S2
O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 LYS A:14 A:12 118.0 NA S -71.2 -43.7 117.0 NA NA B:P21549:NA
LYS B:14 B:12 127.0 0.635 S -72.5 -43.3 126.0 0.63 0.005 A:P21549:0.005
LYS C:14 C:12 112.0 NA S -72.9 -43.3 NA NA NA
LYS D:14 D:12 133.0 0.665 S -73.2 -42.0 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 LYS A:12 A:12 169.0 0.845 G -47.2 -55.1 169.0 0.845 0.0 GOL
HOH
 9.672
3.257
 O
CD
 O2
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 LYS A:23 A:12 84.0 NA G -56.6 -35.2 83.0 NA NA B:P21549:NA
 HOH
 2.914
 N
 O
LYS B:23 B:12 157.0 0.785 G -63.3 -34.8 156.0 0.78 0.005 A:P21549:0.005
 HOH
 2.670
 O
 O
LYS C:23 E:12 102.0 NA G -55.6 -41.0 NA NA NA
LYS D:23 G:12 165.0 0.825 G -61.7 -36.2 NA NA NA
LYS E:23 M:12 153.0 0.765 G -54.0 -42.2 NA NA NA
LYS F:23 N:12 161.0 0.805 G -55.9 -40.5 NA NA NA
LYS G:23 S:12 162.0 0.81 G -56.6 -41.0 NA NA NA
LYS H:23 T:12 99.0 NA G -65.5 -31.3 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 LYS A:14 A:12 151.0 0.755 G -49.6 -45.4 147.0 0.735 0.02 B:P21549:0.02
 HOH
 3.431
 N
 O
LYS B:14 C:12 161.0 0.805 G -47.2 -48.8 160.0 0.8 0.005 A:P21549:0.005
 HOH
 9.907
 O
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 LYS A:12 A:12 171.0 0.855 T -60.9 -22.8 170.0 0.85 0.005 A:P21549:0.005
 HOH
 3.364
 N
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 LYS A:12 A:12 156.0 0.78 G -57.7 -28.8 154.0 0.77 0.01 A:P21549:0.01
 HOH
 3.299
 N
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 LYS A:7 A:12 180.0 0.9 T -56.9 -42.2 180.0 0.9 0.0 HOH
 2.228
 H
 O
LYS B:7 B:12 160.0 0.8 G -66.5 -30.1 160.0 0.8 0.0 HOH
 2.017
 H
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 LYS A:7 A:12 179.0 0.895 H -56.0 -41.3 178.0 0.89 0.005 B:P21549:0.005
 HOH
 2.255
 H
 O
LYS B:7 B:12 160.0 0.8 G -65.2 -29.3 160.0 0.8 0.0 HOH
 1.940
 HZ3
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 LYS A:12 A:12 176.0 0.88 G -57.8 -27.7 176.0 0.88 0.0 HOH
 3.171
 N
 O
LYS B:12 B:12 176.0 0.88 G -63.6 -34.8 175.0 0.875 0.005 A:P21549:0.005
 HOH
 2.384
 NZ
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 LYS A:12 A:12 180.0 0.9 G -54.6 -30.8