Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241808347 . A C CCDS2543.1:NM_000030.2:c.65aAc>aCc_NP_000021.1:p.22N>T Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 ASN A:22 A:22 86.0 NA -97.1 119.9 83.0 NA NA A:P21549:NA
 GOL
GOL
HOH
 5.603
9.849
3.333
 O
N
CA
 O1
O2
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 ASN A:22 A:22 135.0 0.844 -79.4 118.2 124.0 0.775 0.069 A:P21549:0.069
 HOH
 3.398
 CA
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ASN A:22 A:22 140.0 0.875 -100.9 112.6 129.0 0.806 0.069 A:P21549:0.069
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 ASN A:22 A:22 94.0 NA -105.2 101.6 94.0 NA NA
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 ASN A:24 A:22 138.0 0.863 -89.5 111.2 123.0 0.769 0.094 C:P21549:0.094
 HOH
 3.180
 ND2
 O
ASN C:24 C:22 146.0 0.912 -90.1 121.2 132.0 0.825 0.087 A:P21549:0.087
 HOH
 2.516
 ND2
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 ASN A:22 A:22 137.0 0.856 -127.3 108.5 125.0 0.781 0.075 A:P21549:0.075
 HOH
 7.639
 O
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 ASN A:24 A:22 135.0 0.844 -91.8 116.6 125.0 0.781 0.063 B:P21549:0.062
 BME
HOH
 9.691
2.863
 N
OD1
 O1
O
ASN B:24 C:22 143.0 0.894 -93.2 115.2 132.0 0.825 0.069 A:P21549:0.069
 BME
HOH
 9.592
2.726
 N
N
 O1
O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 ASN A:24 A:22 140.0 0.875 -81.5 130.5 123.0 0.769 0.106 B:P21549:0.106
 GOL
 8.541
 O
 O1
ASN B:24 B:22 143.0 0.894 -80.6 129.1 124.0 0.775 0.119 A:P21549:0.119
ASN C:24 C:22 137.0 0.856 -80.4 130.0 NA NA NA
ASN D:24 D:22 137.0 0.856 -80.2 128.6 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 ASN A:22 A:22 129.0 0.806 -95.8 119.9 129.0 0.806 0.0 GOL
HOH
 4.057
3.025
 OD1
N
 O1
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 ASN A:33 A:22 146.0 0.912 -96.1 114.2 138.0 0.863 0.049 B:P21549:0.05
 HOH
 2.776
 OD1
 O
ASN B:33 B:22 140.0 0.875 -87.6 121.0 130.0 0.812 0.063 A:P21549:0.062
 HOH
 2.588
 ND2
 O
ASN C:33 E:22 143.0 0.894 -91.7 116.8 NA NA NA
ASN D:33 G:22 138.0 0.863 -93.6 119.1 NA NA NA
ASN E:33 M:22 138.0 0.863 -93.3 121.1 NA NA NA
ASN F:33 N:22 143.0 0.894 -94.8 116.8 NA NA NA
ASN G:33 S:22 142.0 0.887 -92.7 116.8 NA NA NA
ASN H:33 T:22 139.0 0.869 -94.0 121.3 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 ASN A:24 A:22 142.0 0.887 -94.0 110.3 133.0 0.831 0.056 B:P21549:0.056
ASN B:24 C:22 143.0 0.894 -93.9 109.4 138.0 0.863 0.031 A:P21549:0.031
 HOH
 9.206
 O
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 ASN A:22 A:22 134.0 0.838 -102.5 111.7 126.0 0.787 0.051 A:P21549:0.05
 HOH
 3.306
 CA
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 ASN A:22 A:22 134.0 0.838 -91.7 125.4 127.0 0.794 0.044 A:P21549:0.044
 HOH
 2.308
 OD1
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 ASN A:17 A:22 150.0 0.938 -90.4 114.1 138.0 0.863 0.075 B:P21549:0.075
 HOH
 2.792
 HA
 O
ASN B:17 B:22 148.0 0.925 -93.3 107.5 134.0 0.838 0.087 A:P21549:0.087
 HOH
 1.874
 H
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 ASN A:17 A:22 141.0 0.881 -89.7 114.4 128.0 0.8 0.081 B:P21549:0.081
 HOH
 2.573
 OD1
 O
ASN B:17 B:22 147.0 0.919 -95.4 109.0 132.0 0.825 0.094 A:P21549:0.094
 HOH
 2.017
 H
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 ASN A:22 A:22 144.0 0.9 -97.7 109.5 136.0 0.85 0.05 B:P21549:0.05
 HOH
 2.593
 OD1
 O
ASN B:22 B:22 144.0 0.9 -90.3 116.2 130.0 0.812 0.088 A:P21549:0.087
 GOL
HOH
 8.292
2.648
 O
OD1
 O2
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 ASN A:22 A:22 146.0 0.912 -85.5 111.4