Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241808349 . C A CCDS2543.1:NM_000030.2:c.67Cag>Aag_NP_000021.1:p.23Q>K Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 GLN A:23 A:23 85.0 0.472 -127.5 138.1 17.0 0.094 0.378 A:P21549:0.378
 GOL
GOL
GOL
HOH
 8.343
4.994
8.546
2.808
 NE2
C
NE2
NE2
 O3
O1
O1
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 GLN A:23 A:23 75.0 0.417 -123.1 150.1 12.0 0.067 0.35 A:P21549:0.35
 HOH
 2.651
 N
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLN A:23 A:23 77.0 0.428 -120.8 138.7 14.0 0.078 0.35 A:P21549:0.35
 HOH
 7.445
 NE2
 O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLN A:23 A:23 43.0 NA -112.5 135.0 23.0 NA NA A:P21549:NA
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 GLN A:25 A:23 73.0 0.406 -121.3 132.0 12.0 0.067 0.339 C:P21549:0.339
 HOH
 2.790
 N
 O
GLN C:25 C:23 77.0 0.428 -133.8 138.8 14.0 0.078 0.35 A:P21549:0.35
 HOH
 2.750
 OE1
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 GLN A:23 A:23 84.0 0.467 -124.1 360.0 25.0 0.139 0.328 A:P21549:0.328
 HOH
 4.732
 C
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 GLN A:25 A:23 71.0 0.394 -129.8 136.4 10.0 0.056 0.338 B:P21549:0.339
 BME
HOH
 8.828
2.744
 NE2
NE2
 O1
O
GLN B:25 C:23 71.0 0.394 -127.7 136.4 11.0 0.061 0.333 A:P21549:0.333
 BME
HOH
 8.630
2.897
 NE2
O
 O1
O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 GLN A:25 A:23 70.0 0.389 -142.5 132.5 13.0 0.072 0.317 B:P21549:0.317
 GOL
 5.124
 NE2
 O1
GLN B:25 B:23 71.0 0.394 -140.6 131.8 12.0 0.067 0.327 A:P21549:0.328
GLN C:25 C:23 72.0 0.4 -141.5 132.2 NA NA NA
GLN D:25 D:23 70.0 0.389 -140.7 130.1 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 GLN A:23 A:23 80.0 0.444 -130.5 133.0 80.0 0.444 0.0 GOL
GOL
HOH
 5.356
8.404
2.636
 C
NE2
N
 C1
O1
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 GLN A:34 A:23 70.0 0.389 -128.5 131.0 14.0 0.078 0.311 B:P21549:0.311
 HOH
 2.891
 OE1
 O
GLN B:34 B:23 75.0 0.417 -131.1 136.2 15.0 0.083 0.334 A:P21549:0.333
 HOH
 2.972
 NE2
 O
GLN C:34 E:23 73.0 0.406 -130.8 135.2 NA NA NA
GLN D:34 G:23 74.0 0.411 -129.6 132.5 NA NA NA
GLN E:34 M:23 76.0 0.422 -129.4 137.4 NA NA NA
GLN F:34 N:23 75.0 0.417 -128.0 137.7 NA NA NA
GLN G:34 S:23 75.0 0.417 -128.3 131.4 NA NA NA
GLN H:34 T:23 75.0 0.417 -131.6 133.5 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 GLN A:25 A:23 75.0 0.417 -122.5 135.3 10.0 0.056 0.361 B:P21549:0.361
GLN B:25 C:23 78.0 0.433 -126.8 134.5 14.0 0.078 0.355 A:P21549:0.356
 HOH
 3.888
 NE2
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 GLN A:23 A:23 74.0 0.411 -121.6 142.6 5.0 0.028 0.383 A:P21549:0.383
 HOH
 2.904
 N
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 ARG A:23 A:23 90.0 0.4 -135.1 147.0 37.0 0.164 0.236 A:P21549:0.236
 HOH
 2.812
 N
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 GLN A:18 A:23 73.0 0.406 -125.3 133.6 14.0 0.078 0.328 B:P21549:0.328
 HOH
 2.108
 HE21
 O
GLN B:18 B:23 69.0 0.383 -121.6 133.4 9.0 0.05 0.333 A:P21549:0.333
 HOH
 1.971
 HE21
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 GLN A:18 A:23 74.0 0.411 -125.4 133.2 15.0 0.083 0.328 B:P21549:0.328
 HOH
 2.168
 HE21
 O
GLN B:18 B:23 67.0 0.372 -124.1 136.8 9.0 0.05 0.322 A:P21549:0.322
 HOH
 2.062
 HE21
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 GLN A:23 A:23 74.0 0.411 -122.0 134.6 16.0 0.089 0.322 B:P21549:0.322
 GOL
HOH
 6.956
2.763
 NE2
NE2
 O3
O
GLN B:23 B:23 72.0 0.4 -126.0 130.0 13.0 0.072 0.328 A:P21549:0.328
 GOL
HOH
 3.660
2.883
 NE2
OE1
 O2
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 GLN A:23 A:23 64.0 0.356 -125.5 137.7