Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241808356 . T A CCDS2543.1:NM_000030.2:c.74cTg>cAg_NP_000021.1:p.25L>Q Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 LEU A:25 A:25 28.0 0.165 E -85.0 102.3 3.0 0.018 0.147 A:P21549:0.147
 AOA
GOL
HOH
 9.094
6.646
2.794
 CD1
N
O
 N1
O1
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 LEU A:25 A:25 28.0 0.165 E -92.8 114.2 3.0 0.018 0.147 A:P21549:0.147
 HOH
 3.027
 O
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 LEU A:25 A:25 29.0 0.171 E -89.8 103.2 3.0 0.018 0.153 A:P21549:0.153
 HOH
 3.093
 O
 O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 LEU A:25 A:25 51.0 0.3 E -87.7 105.3 7.0 0.041 0.259 A:P21549:0.259
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 LEU A:27 A:25 32.0 0.188 E -95.8 103.5 4.0 0.024 0.164 C:P21549:0.165
 HOH
 3.010
 O
 O
LEU C:27 C:25 30.0 0.176 E -87.3 102.3 3.0 0.018 0.158 A:P21549:0.159
 HOH
 2.734
 O
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 LEU A:25 A:25 36.0 0.212 360.0 119.9 9.0 0.053 0.159 A:P21549:0.159
 DIO
HOH
 9.768
3.626
 CD1
N
 O1
O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 LEU A:27 A:25 30.0 0.176 E -90.7 95.5 3.0 0.018 0.158 B:P21549:0.159
 HOH
 2.616
 O
 O
LEU B:27 C:25 32.0 0.188 E -95.9 104.2 4.0 0.024 0.164 A:P21549:0.165
 HOH
 2.792
 O
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 LEU A:27 A:25 27.0 0.159 E -93.4 103.6 2.0 0.012 0.147 B:P21549:0.147
 GOL
 9.627
 CD2
 C3
LEU B:27 B:25 27.0 0.159 E -93.6 103.7 2.0 0.012 0.147 A:P21549:0.147
 GOL
 9.074
 CB
 O3
LEU C:27 C:25 28.0 0.165 E -92.8 104.3 NA NA NA
LEU D:27 D:25 27.0 0.159 E -94.5 104.2 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 LEU A:25 A:25 31.0 0.182 E -86.1 111.0 31.0 0.182 0.0 AOA
GOL
HOH
 9.451
7.110
2.997
 CD2
N
O
 N1
C1
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 LEU A:36 A:25 34.0 0.2 E -92.3 102.3 4.0 0.024 0.176 B:P21549:0.176
 HOH
 2.791
 O
 O
LEU B:36 B:25 34.0 0.2 E -95.2 98.7 5.0 0.029 0.171 A:P21549:0.171
 HOH
 2.780
 O
 O
LEU C:36 E:25 33.0 0.194 E -97.5 99.2 NA NA NA
LEU D:36 G:25 33.0 0.194 E -90.9 99.4 NA NA NA
LEU E:36 M:25 35.0 0.206 E -84.8 100.4 NA NA NA
LEU F:36 N:25 35.0 0.206 E -86.3 100.9 NA NA NA
LEU G:36 S:25 34.0 0.2 E -90.3 99.8 NA NA NA
LEU H:36 T:25 35.0 0.206 E -92.0 96.8 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 LEU A:27 A:25 30.0 0.176 E -85.2 101.4 4.0 0.024 0.152 B:P21549:0.153
 HOH
 3.937
 O
 O
LEU B:27 C:25 29.0 0.171 E -87.4 107.0 4.0 0.024 0.147 A:P21549:0.147
 HOH
 8.608
 CD2
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 LEU A:25 A:25 33.0 0.194 E -96.1 106.8 3.0 0.018 0.176 A:P21549:0.176
 HOH
 2.189
 O
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 LEU A:25 A:25 39.0 0.229 E -89.1 105.7 4.0 0.024 0.205 A:P21549:0.206
 HOH
 2.766
 O
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 LEU A:20 A:25 30.0 0.176 E -92.3 99.7 2.0 0.012 0.164 B:P21549:0.165
 HOH
 2.791
 O
 O
LEU B:20 B:25 27.0 0.159 E -94.2 97.8 2.0 0.012 0.147 A:P21549:0.147
 HOH
 2.660
 O
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 LEU A:20 A:25 30.0 0.176 E -91.3 100.4 2.0 0.012 0.164 B:P21549:0.165
 HOH
 2.800
 O
 O
LEU B:20 B:25 28.0 0.165 E -93.0 100.2 2.0 0.012 0.153 A:P21549:0.153
 HOH
 2.690
 O
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 LEU A:25 A:25 32.0 0.188 E -92.5 98.3 4.0 0.024 0.164 B:P21549:0.165
 GOL
HOH
 7.663
2.658
 CD2
O
 O3
O
LEU B:25 B:25 30.0 0.176 E -88.8 98.7 3.0 0.018 0.158 A:P21549:0.159
 GOL
HOH
 6.435
2.624
 CD2
O
 O3
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 LEU A:25 A:25 29.0 0.171 E -86.7 96.4