Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241808359 . T A CCDS2543.1:NM_000030.2:c.77cTg>cAg_NP_000021.1:p.26L>Q Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 LEU A:26 A:26 2.0 0.012 -123.3 38.3 2.0 0.012 0.0 AOA
GOL
HOH
 8.954
7.579
3.539
 C
CD1
CD2
 N1
O1
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 LEU A:26 A:26 2.0 0.012 -131.5 34.8 2.0 0.012 0.0 HOH
 3.561
 CD2
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 LEU A:26 A:26 1.0 0.006 -123.7 40.1 1.0 0.006 0.0 HOH
 3.430
 CA
 O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 LEU A:26 A:26 5.0 0.029 -125.9 34.6 5.0 0.029 0.0
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 LEU A:28 A:26 1.0 0.006 -121.4 34.2 1.0 0.006 0.0 HOH
 3.634
 CD2
 O
LEU C:28 C:26 1.0 0.006 -120.3 28.6 1.0 0.006 0.0 HOH
 3.727
 CA
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 LEU A:26 A:26 11.0 0.065 -134.3 38.4 11.0 0.065 0.0 HOH
 3.774
 CG
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 LEU A:28 A:26 1.0 0.006 -116.8 37.0 1.0 0.006 0.0 HOH
 3.925
 CD2
 O
LEU B:28 C:26 1.0 0.006 -121.0 28.2 1.0 0.006 0.0 HOH
 3.762
 CD2
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 LEU A:28 A:26 1.0 0.006 -122.2 39.2 1.0 0.006 0.0 GOL
 9.425
 C
 C3
LEU B:28 B:26 1.0 0.006 -120.7 39.6 1.0 0.006 0.0 GOL
 8.151
 C
 O3
LEU C:28 C:26 1.0 0.006 -122.2 39.3 NA NA NA
LEU D:28 D:26 1.0 0.006 -122.0 38.2 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 LEU A:26 A:26 1.0 0.006 -130.3 46.9 1.0 0.006 0.0 AOA
GOL
HOH
 9.809
7.995
3.430
 C
CD1
CD2
 N1
O2
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 LEU A:37 A:26 2.0 0.012 -122.2 35.6 2.0 0.012 0.0 HOH
 3.566
 CD2
 O
LEU B:37 B:26 2.0 0.012 -119.2 32.5 2.0 0.012 0.0 HOH
 3.585
 CD2
 O
LEU C:37 E:26 2.0 0.012 -117.1 31.4 NA NA NA
LEU D:37 G:26 3.0 0.018 -118.5 28.7 NA NA NA
LEU E:37 M:26 2.0 0.012 -115.3 36.8 NA NA NA
LEU F:37 N:26 2.0 0.012 -117.6 31.2 NA NA NA
LEU G:37 S:26 3.0 0.018 -116.1 32.8 NA NA NA
LEU H:37 T:26 2.0 0.012 -111.5 38.0 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 LEU A:28 A:26 2.0 0.012 -115.6 28.0 2.0 0.012 0.0 HOH
 4.145
 CD2
 O
LEU B:28 C:26 2.0 0.012 -124.2 27.4 2.0 0.012 0.0
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 LEU A:26 A:26 2.0 0.012 -126.2 36.5 2.0 0.012 0.0 GOL
HOH
 9.978
3.458
 C
CA
 C2
O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 LEU A:26 A:26 2.0 0.012 -124.6 28.1 2.0 0.012 0.0 HOH
 3.552
 CD2
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 LEU A:21 A:26 1.0 0.006 -115.8 32.8 1.0 0.006 0.0 HOH
 3.038
 HD23
 O
LEU B:21 B:26 1.0 0.006 -113.5 31.0 1.0 0.006 0.0 HOH
 3.020
 HD23
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 LEU A:21 A:26 1.0 0.006 -117.9 33.0 1.0 0.006 0.0 HOH
 3.005
 HD23
 O
LEU B:21 B:26 1.0 0.006 -112.8 27.7 1.0 0.006 0.0 HOH
 2.952
 HD23
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 LEU A:26 A:26 1.0 0.006 -113.5 35.1 1.0 0.006 0.0 GOL
HOH
 8.555
3.868
 N
CA
 O3
O
LEU B:26 B:26 2.0 0.012 -114.2 32.3 2.0 0.012 0.0 GOL
HOH
 8.990
3.733
 N
CD2
 O3
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 LEU A:26 A:26 0.0 0.0 -113.7 24.7