Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241808361 . G A CCDS2543.1:NM_000030.2:c.79Ggg>Agg_NP_000021.1:p.27G>R Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 GLY A:27 A:27 0.0 0.0 S -113.5 -172.1 0.0 0.0 0.0 PLP
AOA
HOH
 8.675
5.887
2.676
 C
C
O
 C4A
N1
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 GLY A:27 A:27 2.0 0.027 S -97.1 -163.6 2.0 0.027 0.0 PLP
HOH
 8.667
2.911
 C
N
 O3
O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLY A:27 A:27 1.0 0.013 S -100.7 -177.2 1.0 0.013 0.0 PMP
HOH
 8.118
2.371
 C
O
 N4A
O
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 GLY A:27 A:27 4.0 0.053 S -100.8 -176.6 4.0 0.053 0.0 PLP
 8.767
 O
 O3
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 GLY A:29 A:27 3.0 0.04 S -90.4 -167.1 3.0 0.04 0.0 HOH
 2.848
 O
 O
GLY C:29 C:27 1.0 0.013 S -87.5 -177.5 1.0 0.013 0.0 HOH
 2.901
 O
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 GLY A:27 A:27 2.0 0.027 S -98.8 -171.4 2.0 0.027 0.0 PLP
DIO
HOH
 8.643
6.943
7.758
 O
C
N
 C4A
C2'
O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 GLY A:29 A:27 1.0 0.013 S -97.1 -169.1 1.0 0.013 0.0 BME
HOH
 8.814
2.904
 CA
O
 O1
O
GLY B:29 C:27 3.0 0.04 S -90.6 -166.6 3.0 0.04 0.0 BME
HOH
 8.394
2.971
 CA
O
 C1
O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 GLY A:29 A:27 1.0 0.013 S -95.8 -169.3 1.0 0.013 0.0 GOL
 6.876
 C
 O1
GLY B:29 B:27 0.0 0.0 S -97.2 -170.5 0.0 0.0 0.0 GOL
 5.186
 C
 O3
GLY C:29 C:27 1.0 0.013 S -96.7 -170.4 NA NA NA
GLY D:29 D:27 0.0 0.0 S -98.0 -168.2 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 GLY A:27 A:27 1.0 0.013 S -118.4 -173.0 1.0 0.013 0.0 AOA
HOH
 6.713
2.784
 C
O
 C2
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 GLY A:38 A:27 2.0 0.027 S -99.6 -168.3 2.0 0.027 0.0 PLP
HOH
 8.750
2.881
 O
N
 C4A
O
GLY B:38 B:27 2.0 0.027 S -94.1 -166.0 2.0 0.027 0.0 PLP
HOH
 8.704
2.954
 O
N
 C4A
O
GLY C:38 E:27 2.0 0.027 S -102.5 -166.1 NA NA NA
GLY D:38 G:27 2.0 0.027 S -94.9 -166.3 NA NA NA
GLY E:38 M:27 1.0 0.013 S -99.3 -170.2 NA NA NA
GLY F:38 N:27 2.0 0.027 S -97.4 -165.6 NA NA NA
GLY G:38 S:27 1.0 0.013 S -102.4 -169.3 NA NA NA
GLY H:38 T:27 1.0 0.013 S -101.0 -173.1 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 GLY A:29 A:27 1.0 0.013 S -78.0 -171.2 1.0 0.013 0.0 BME
HOH
 7.129
4.520
 C
O
 O1
O
GLY B:29 C:27 1.0 0.013 S -76.8 -169.0 1.0 0.013 0.0 HOH
 7.237
 C
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 GLY A:27 A:27 0.0 0.0 S -103.3 -167.0 0.0 0.0 0.0 PLP
GOL
HOH
 8.783
6.809
2.334
 C
C
O
 C4A
O2
O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 GLY A:27 A:27 1.0 0.013 S -84.0 -166.4 1.0 0.013 0.0 PLP
HOH
 9.449
2.843
 C
O
 O3
O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 GLY A:22 A:27 1.0 0.013 S -97.9 -169.6 1.0 0.013 0.0 PLP
HOH
 8.556
2.359
 C
H
 H4A
O
GLY B:22 B:27 0.0 0.0 S -89.0 -171.5 0.0 0.0 0.0 PLP
HOH
 8.420
2.239
 C
H
 H4A
O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 GLY A:22 A:27 1.0 0.013 S -99.8 -168.6 1.0 0.013 0.0 PLR
HOH
 8.843
2.441
 C
H
 HO3
O
GLY B:22 B:27 0.0 0.0 S -85.0 -173.0 0.0 0.0 0.0 PLR
HOH
 8.745
2.347
 C
H
 H4A2
O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 GLY A:27 A:27 1.0 0.013 S -96.0 -168.3 1.0 0.013 0.0 PLP
GOL
HOH
 9.192
8.506
2.726
 C
N
O
 O3
O3
O
GLY B:27 B:27 1.0 0.013 S -98.1 -169.5 1.0 0.013 0.0 GOL
PLP
HOH
 9.143
9.065
2.563
 N
C
O
 O3
O3
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 GLY A:27 A:27 0.0 0.0 S -76.8 -179.5