Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 241808386 . C A CCDS2543.1:NM_000030.2:c.104cCt>cAt_NP_000021.1:p.35P>H Homo sapiens alanine-glyoxylate aminotransferase (AGXT), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1h0c 1 P21549 100.0 0.0 X-RAY
 2003-06-12 PRO A:35 A:35 114.0 0.786 H -56.6 -37.1 114.0 0.786 0.0 GOL
HOH
 5.008
3.136
 CD
CD
 C1
O
5og0 1 P21549 100.0 0.0 X-RAY
 2017-09-27 PRO A:35 A:35 106.0 0.731 H -59.8 -32.6 106.0 0.731 0.0 HOH
 3.410
 CD
 O
6rv0 1 P21549 100.0 0.0 X-RAY
 2020-04-08 PRO A:35 A:35 109.0 0.752 H -54.9 -39.5 109.0 0.752 0.0
6rv1 1 P21549 100.0 0.0 X-RAY
 2020-04-08 PRO A:35 A:35 107.0 0.738 H -49.1 -43.0 107.0 0.738 0.0
3r9a 1 P21549 100.0 0.0 X-RAY
 2011-05-11 PRO A:37 A:35 110.0 0.759 H -44.7 -37.0 110.0 0.759 0.0 HOH
 2.912
 O
 O
PRO C:37 C:35 112.0 0.772 H -50.9 -34.0 112.0 0.772 0.0 HOH
 2.502
 O
 O
5ofy 1 P21549 99.74 0.0 X-RAY
 2017-09-27 PRO A:35 A:35 108.0 0.745 H -45.8 -46.4 108.0 0.745 0.0 HOH
 3.405
 CD
 O
4kyo 1 P21549 99.74 0.0 X-RAY
 2014-11-19 PRO A:37 A:35 108.0 0.745 H -44.8 -42.8 108.0 0.745 0.0 HOH
 2.961
 O
 O
PRO B:37 C:35 112.0 0.772 H -51.7 -37.2 112.0 0.772 0.0 HOH
 2.611
 O
 O
4i8a 1 P21549 99.74 0.0 X-RAY
 2013-05-01 PRO A:37 A:35 107.0 0.738 H -53.9 -45.8 107.0 0.738 0.0
PRO B:37 B:35 107.0 0.738 H -56.8 -44.4 107.0 0.738 0.0
PRO C:37 C:35 106.0 0.731 H -56.0 -44.7 NA NA NA
PRO D:37 D:35 107.0 0.738 H -55.8 -45.3 NA NA NA
1j04 1 P21549 99.74 0.0 X-RAY
 2003-11-11 PRO A:35 A:35 112.0 0.772 H -52.5 -39.3 112.0 0.772 0.0 GOL
HOH
 4.499
5.440
 CG
O
 O1
O
5luc 1 P21549 99.74 0.0 X-RAY
 2017-09-20 PRO A:46 A:35 109.0 0.752 H -54.2 -38.8 109.0 0.752 0.0 HOH
 2.750
 O
 O
PRO B:46 B:35 109.0 0.752 H -57.8 -36.1 109.0 0.752 0.0 HOH
 2.814
 O
 O
PRO C:46 E:35 107.0 0.738 H -55.4 -42.3 NA NA NA
PRO D:46 G:35 111.0 0.766 H -56.3 -40.1 NA NA NA
PRO E:46 M:35 110.0 0.759 H -59.3 -40.1 NA NA NA
PRO F:46 N:35 109.0 0.752 H -61.3 -40.9 NA NA NA
PRO G:46 S:35 110.0 0.759 H -55.5 -43.8 NA NA NA
PRO H:46 T:35 110.0 0.759 H -54.6 -41.8 NA NA NA
4kxk 1 P21549 99.49 0.0 X-RAY
 2014-11-19 PRO A:37 A:35 107.0 0.738 H -58.9 -40.2 107.0 0.738 0.0 HOH
 3.215
 O
 O
PRO B:37 C:35 106.0 0.731 H -52.4 -43.5 106.0 0.731 0.0 HOH
 3.164
 CD
 O
4cbr 1 P21549 99.23 0.0 X-RAY
 2014-07-09 PRO A:35 A:35 111.0 0.766 H -53.1 -42.5 111.0 0.766 0.0 HOH
 3.079
 O
 O
4cbs 1 P21549 98.72 0.0 X-RAY
 2014-07-09 PRO A:35 A:35 109.0 0.752 H -53.7 -42.7 109.0 0.752 0.0 HOH
 2.971
 O
 O
5f9s 1 P21549 100.0 0.0 X-RAY
 2016-12-21 PRO A:30 A:35 108.0 0.745 H -56.2 -41.6 108.0 0.745 0.0 HOH
 2.754
 HD3
 O
PRO B:30 B:35 109.0 0.752 H -55.8 -38.1 109.0 0.752 0.0 HOH
 2.586
 HD2
 O
5hhy 1 P21549 100.0 0.0 X-RAY
 2017-01-25 PRO A:30 A:35 108.0 0.745 H -55.7 -43.9 108.0 0.745 0.0 HOH
 2.747
 O
 O
PRO B:30 B:35 107.0 0.738 H -54.5 -36.3 107.0 0.738 0.0 HOH
 2.739
 HD2
 O
2yob 1 P21549 99.74 0.0 X-RAY
 2013-10-30 PRO A:35 A:35 108.0 0.745 H -51.1 -41.3 108.0 0.745 0.0 GOL
HOH
 5.280
2.793
 O
O
 O3
O
PRO B:35 B:35 108.0 0.745 H -52.1 -38.0 108.0 0.745 0.0 GOL
HOH
 6.663
2.759
 O
O
 O1
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21549-f1 1 P21549 100.0 0.0 PRO A:35 A:35 110.0 0.759 H -53.7 -39.8